Basic Information
Gene Model:Bol025771
Gene Family:Not classificated
Chromosome:C03
Scaffold:Scaffold000085
Sequence:
 | 
Gene Structure
Nucleotide Length:870 bp
Transcript Length:513 bp
Protein Length:170 aa
Strand:+
Location:C03: 4423699 : 4424568
Gene CDSs(2): 1-466 | 824-870 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF02519Auxin_inducible 81 143 6e-33IPR003676Auxin responsive SAUR protein
Gene Ontology
GO TermGO TypeDescription

Note: this gene was not detected its best hit in Swiss-Prot database.

Swiss-Prot
Best HitE_value Description
P322955e-14ARG7_PHAAU Indole-3-acetic acid-induced protein ARG7 OS=Phaseolus aureus GN=ARG7 PE=2 SV=1
TrEMBL
Best HitE_value Description
Q8GWV62e-77Q8GWV6_ARATH Putative uncharacterized protein At5g20810/T1M15_210 OS=Arabidopsis thaliana GN=At5g20810/T1M15_210 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL3125(13 genes,7 taxa):Arabidopsis thalianaAT3G43120.1
ORTHOMCL3125(13 genes,7 taxa):Arabidopsis thalianaAT5G20810.2
ORTHOMCL3125(13 genes,7 taxa):Brassica oleraceaBol025771
ORTHOMCL3125(13 genes,7 taxa):Brassica oleraceaBol035614
ORTHOMCL3125(13 genes,7 taxa):Brassica oleraceaBol035792
ORTHOMCL3125(13 genes,7 taxa):Brassica rapaBra002330
ORTHOMCL3125(13 genes,7 taxa):Brassica rapaBra006576
ORTHOMCL3125(13 genes,7 taxa):Brassica rapaBra034954
ORTHOMCL3125(13 genes,7 taxa):Vitis viniferaGSVIVT01015023001
ORTHOMCL3125(13 genes,7 taxa):Populus trichocarpaPOPTR_0006s13940.1
ORTHOMCL3125(13 genes,7 taxa):Populus trichocarpaPOPTR_0018s07390.1
ORTHOMCL3125(13 genes,7 taxa):Sorghum bicolorSb02g025620.1
ORTHOMCL3125(13 genes,7 taxa):Carica papayaevm.TU.supercontig_2136.1
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:1982512..4896037 (+)A.thalianaChr5:4002775..7686779 (+)386
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:3384356..7484156 (+)B.rapaA10:5981599..12607476 (+)333
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
RAT5G2081070438987045712Chr5Subgenome_II626
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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