Basic Information
Gene Model:Bol025751
Gene Family:Not classificated
Chromosome:C03
Scaffold:Scaffold000086
Sequence:
 | 
Gene Structure
Nucleotide Length:2459 bp
Transcript Length:765 bp
Protein Length:254 aa
Strand:+
Location:C03: 17042887 : 17045345
Gene CDSs(4): 1-195 | 279-555 | 2095-2249 | 2322-2459 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF00481PP2C 5 246 9e-62IPR014045Protein phosphatase 2C, N-terminal
HMMPantherPTHR13832:SF87PROTEIN PHOSPHATASE 4 254 6.6e-106Not foundNot found
HMMPantherPTHR13832PROTEIN PHOSPHATASE 4 254 6.6e-106IPR015655Protein phosphatase 2C
HMMSmartSM00332no description 1 251 3.1e-78IPR001932Protein phosphatase 2C-related
Gene3DG3DSA:3.60.40.10no description 3 253 6.8e-65IPR001932Protein phosphatase 2C-related
Segsegseg 248 251 NANot foundNot found
superfamilySSF81606Protein serine/threo 3 254 5e-68IPR001932Protein phosphatase 2C-related
Gene Ontology
GO TermGO TypeDescription
GO:0003824 Molecular Function catalytic activity
Swiss-Prot
Best HitE_value Description
Q9LDA71e-140P2C39_ARATH Probable protein phosphatase 2C 39 OS=Arabidopsis thaliana GN=At3g15260 PE=2 SV=1
TrEMBL
Best HitE_value Description
A9PCG71e-121A9PCG7_POPTR Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_579442 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
sbi:SORBI_01g0384102e-37K01090E3.1.3.16protein phosphatase
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List

Note: the orthologous genes of this gene was not detected by OrthoMCL software with default parameters.

Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:16774734..17162326 (+)A.thalianaChr3:4971223..5301745 (+)35
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:16805706..17162326 (+)B.rapaA05:3251621..3676384 (-)27
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
FAT3G1526051386865142644Chr3Subgenome_II37
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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