Basic Information
Gene Model:Bol025749
Gene Family:Transcription Factor Families
Chromosome:C03
Scaffold:Scaffold000086
Sequence:
 | 
Gene Structure
Nucleotide Length:636 bp
Transcript Length:636 bp
Protein Length:211 aa
Strand:+
Location:C03: 17014926 : 17015561
Gene CDSs(1): 1-636 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Gene3DG3DSA:3.30.730.10no description 18 79 3.2e-23IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
superfamilySSF54171DNA-binding domain 18 79 2.2e-23IPR016177DNA-binding, integrase-type
HMMPfamPF00847AP2 18 69 2.2e-20IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
HMMSmartSM00380no description 19 82 1.8e-37IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
Segsegseg 177 186 NANot foundNot found
Segsegseg 105 116 NANot foundNot found
Segsegseg 52 65 NANot foundNot found
ProfileScanPS51032AP2_ERF 19 76 24.302IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
Gene Ontology
GO TermGO TypeDescription
GO:0003677 Molecular Function DNA binding
GO:0003700 Molecular Function sequence-specific DNA binding transcription factor activity
GO:0006355 Biological Process regulation of transcription, DNA-dependent
Swiss-Prot
Best HitE_value Description
O803403e-79ERF78_ARATH Ethylene-responsive transcription factor 4 OS=Arabidopsis thaliana GN=ERF4 PE=1 SV=1
TrEMBL
Best HitE_value Description
Q8S2S71e-43Q8S2S7_THEHA Ethylene responsive element binding factor 4-like protein OS=Thellungiella halophila PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT3G152105e-79K09286EREBPEREBP-like factor
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL15574(4 genes,3 taxa):Arabidopsis thalianaAT3G15210.1
ORTHOMCL15574(4 genes,3 taxa):Brassica oleraceaBol011129
ORTHOMCL15574(4 genes,3 taxa):Brassica oleraceaBol025749
ORTHOMCL15574(4 genes,3 taxa):Brassica rapaBra001588
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:16774734..17162326 (+)A.thalianaChr3:4971223..5301745 (+)35
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:16805706..17162326 (+)B.rapaA05:3251621..3676384 (-)27
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
FAT3G1521051214225122562Chr3Subgenome_II37
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


logo