Basic Information
Gene Model:Bol025696
Gene Family:Not classificated
Chromosome:C03
Scaffold:Scaffold000086
Sequence:
 | 
Gene Structure
Nucleotide Length:3583 bp
Transcript Length:894 bp
Protein Length:297 aa
Strand:+
Location:C03: 16391642 : 16395224
Gene CDSs(4): 1-139 | 1744-2225 | 3203-3351 | 3460-3583 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
superfamilySSF81606Protein serine/threo 59 292 1.1e-19IPR001932Protein phosphatase 2C-related
HMMPfamPF00481PP2C 223 284 5.6e-12IPR014045Protein phosphatase 2C, N-terminal
HMMSmartSM00332no description 39 289 2.8e-05IPR001932Protein phosphatase 2C-related
HMMPantherPTHR13832PROTEIN PHOSPHATASE 78 295 9e-102IPR015655Protein phosphatase 2C
HMMPantherPTHR13832:SF4PROTEIN PHOSPHATASE 78 295 9e-102Not foundNot found
Gene3DG3DSA:3.60.40.10no description 77 295 1.3e-16IPR001932Protein phosphatase 2C-related
Gene Ontology
GO TermGO TypeDescription
GO:0003824 Molecular Function catalytic activity
Swiss-Prot
Best HitE_value Description
Q9T0101e-123P2C54_ARATH Probable protein phosphatase 2C 54 OS=Arabidopsis thaliana GN=At4g11040 PE=2 SV=1
TrEMBL
Best HitE_value Description
B9RIK14e-23B9RIK1_RICCO Protein phosphatase 2c, putative OS=Ricinus communis GN=RCOM_1579770 PE=3 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
rcu:RCOM_15797705e-24K14497PP2Cprotein phosphatase 2C
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL25862(2 genes,2 taxa):Brassica oleraceaBol025696
ORTHOMCL25862(2 genes,2 taxa):Brassica rapaBra000731
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:15448692..16558399 (+)A.thalianaChr4:5536699..6906759 (+)70
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:13895784..16558399 (+)B.rapaA03:15447774..16682343 (+)164
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
PAT4G1104067451616746698Chr4Subgenome_I67
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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