Basic Information
Gene Model:Bol025600
Gene Family:Not classificated
Chromosome:C03
Scaffold:Scaffold000086
Sequence:
 | 
Gene Structure
Nucleotide Length:1674 bp
Transcript Length:1674 bp
Protein Length:557 aa
Strand:-
Location:C03: 15512532 : 15514205
Gene CDSs(1): 1-1674 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Segsegseg 293 303 NANot foundNot found
Segsegseg 26 40 NANot foundNot found
Segsegseg 79 88 NANot foundNot found
Segsegseg 216 233 NANot foundNot found
PatternScanPS00284SERPIN 283 293 NAIPR000215Protease inhibitor I4, serpin
Gene Ontology
GO TermGO TypeDescription
GO:0004867 Molecular Function serine-type endopeptidase inhibitor activity
Swiss-Prot
Best HitE_value Description

Note: best hit of this gene was not detected in Swiss-Prot database.

TrEMBL
Best HitE_value Description
Q9LE450.0Q9LE45_ARATH Putative uncharacterized protein AT4g08810 OS=Arabidopsis thaliana GN=AT4g08810 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL10120(8 genes,8 taxa):Arabidopsis thalianaAT4G08810.1
ORTHOMCL10120(8 genes,8 taxa):Brassica oleraceaBol025600
ORTHOMCL10120(8 genes,8 taxa):Brassica rapaBra000656
ORTHOMCL10120(8 genes,8 taxa):Vitis viniferaGSVIVT01025447001
ORTHOMCL10120(8 genes,8 taxa):Oryza sativaOs07t0633600-01
ORTHOMCL10120(8 genes,8 taxa):Populus trichocarpaPOPTR_0001s04270.1
ORTHOMCL10120(8 genes,8 taxa):Sorghum bicolorSb02g040390.1
ORTHOMCL10120(8 genes,8 taxa):Carica papayaevm.TU.supercontig_119.55
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:15448692..16558399 (+)A.thalianaChr4:5536699..6906759 (+)70
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:13895784..16558399 (+)B.rapaA03:15447774..16682343 (+)164
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
PAT4G0881056160525617939Chr4Subgenome_I67
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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