Basic Information
Gene Model:Bol025579
Gene Family:Protein Kinase Gene Families
Chromosome:C04
Scaffold:Scaffold000087_P2
Sequence:
 | 
Gene Structure
Nucleotide Length:2022 bp
Transcript Length:2022 bp
Protein Length:673 aa
Strand:-
Location:C04: 5241910 : 5243931
Gene CDSs(1): 1-2022 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF00069Pkinase 345 543 1.2e-47IPR017442Serine/threonine-protein kinase-like domain
HMMPfamPF00139Lectin_legB 21 260 2.7e-103IPR001220Legume lectin, beta chain
PatternScanPS00107PROTEIN_KINASE_ATP 351 375 NAIPR017441Protein kinase, ATP binding site
PatternScanPS00108PROTEIN_KINASE_ST 466 478 NAIPR008271Serine/threonine-protein kinase, active site
HMMSmartSM00219no description 345 616 8.2e-27IPR020635Tyrosine-protein kinase, subgroup, catalytic domain
HMMSmartSM00220no description 345 616 9.4e-37IPR002290Serine/threonine-protein kinase domain
superfamilySSF49899Concanavalin A-like 20 283 1e-79IPR008985Concanavalin A-like lectin/glucanase
superfamilySSF56112Protein kinase-like 315 616 5.8e-81IPR011009Protein kinase-like domain
Gene3DG3DSA:1.10.510.10no description 424 627 4.2e-48Not foundNot found
Gene3DG3DSA:3.30.200.20no description 326 421 8e-24Not foundNot found
Gene3DG3DSA:2.60.120.200no description 20 266 3.8e-73IPR013320Concanavalin A-like lectin/glucanase, subgroup
HMMPantherPTHR23258SERINE-THREONINE PRO 212 627 2.5e-263Not foundNot found
HMMPantherPTHR23258:SF435SERINE/THREONINE-SPE 212 627 2.5e-263Not foundNot found
ProfileScanPS50011PROTEIN_KINASE_DOM 345 622 36.753IPR000719Protein kinase, catalytic domain
Segsegseg 319 327 NANot foundNot found
Segsegseg 622 638 NANot foundNot found
Segsegseg 266 278 NANot foundNot found
Segsegseg 78 90 NANot foundNot found
Segsegseg 2 15 NANot foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0004672 Molecular Function protein kinase activity
GO:0004674 Molecular Function protein serine/threonine kinase activity
GO:0005488 Molecular Function binding
GO:0005524 Molecular Function ATP binding
GO:0006468 Biological Process protein phosphorylation
Swiss-Prot
Best HitE_value Description
Q66GN21e-142LRKA3_ARATH Lectin-domain containing receptor kinase A4.3 OS=Arabidopsis thaliana GN=LECRKA4.3 PE=2 SV=1
TrEMBL
Best HitE_value Description
O809390.0O80939_ARATH Putative receptor-like protein kinase OS=Arabidopsis thaliana GN=At2g37710 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT1G718301e-60K13418SERK1--
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL11(177 genes,8 taxa):Arabidopsis thalianaAT1G70110.1
ORTHOMCL11(177 genes,8 taxa):Arabidopsis thalianaAT1G70130.1
ORTHOMCL11(177 genes,8 taxa):Arabidopsis thalianaAT2G37710.1
ORTHOMCL11(177 genes,8 taxa):Arabidopsis thalianaAT3G45330.1
ORTHOMCL11(177 genes,8 taxa):Arabidopsis thalianaAT3G45410.1
ORTHOMCL11(177 genes,8 taxa):Arabidopsis thalianaAT3G45420.1
ORTHOMCL11(177 genes,8 taxa):Arabidopsis thalianaAT3G45430.1
ORTHOMCL11(177 genes,8 taxa):Arabidopsis thalianaAT3G45440.1
ORTHOMCL11(177 genes,8 taxa):Arabidopsis thalianaAT3G53810.1
ORTHOMCL11(177 genes,8 taxa):Arabidopsis thalianaAT3G55550.1
ORTHOMCL11(177 genes,8 taxa):Arabidopsis thalianaAT3G59700.1
ORTHOMCL11(177 genes,8 taxa):Arabidopsis thalianaAT3G59730.1
ORTHOMCL11(177 genes,8 taxa):Arabidopsis thalianaAT3G59740.1
ORTHOMCL11(177 genes,8 taxa):Arabidopsis thalianaAT3G59750.1
ORTHOMCL11(177 genes,8 taxa):Arabidopsis thalianaAT4G02410.1
ORTHOMCL11(177 genes,8 taxa):Arabidopsis thalianaAT4G02420.1
ORTHOMCL11(177 genes,8 taxa):Arabidopsis thalianaAT4G29050.1
ORTHOMCL11(177 genes,8 taxa):Arabidopsis thalianaAT5G59260.1
ORTHOMCL11(177 genes,8 taxa):Arabidopsis thalianaAT5G59270.1
ORTHOMCL11(177 genes,8 taxa):Arabidopsis thalianaAT5G60270.1
ORTHOMCL11(177 genes,8 taxa):Arabidopsis thalianaAT5G60280.1
ORTHOMCL11(177 genes,8 taxa):Arabidopsis thalianaAT5G60300.3
ORTHOMCL11(177 genes,8 taxa):Arabidopsis thalianaAT5G60310.1
ORTHOMCL11(177 genes,8 taxa):Arabidopsis thalianaAT5G60320.1
ORTHOMCL11(177 genes,8 taxa):Brassica oleraceaBol008938
ORTHOMCL11(177 genes,8 taxa):Brassica oleraceaBol017230
ORTHOMCL11(177 genes,8 taxa):Brassica oleraceaBol017234
ORTHOMCL11(177 genes,8 taxa):Brassica oleraceaBol017235
ORTHOMCL11(177 genes,8 taxa):Brassica oleraceaBol021105
ORTHOMCL11(177 genes,8 taxa):Brassica oleraceaBol021637
ORTHOMCL11(177 genes,8 taxa):Brassica oleraceaBol023626
ORTHOMCL11(177 genes,8 taxa):Brassica oleraceaBol023809
ORTHOMCL11(177 genes,8 taxa):Brassica oleraceaBol025579
ORTHOMCL11(177 genes,8 taxa):Brassica oleraceaBol025886
ORTHOMCL11(177 genes,8 taxa):Brassica oleraceaBol029475
ORTHOMCL11(177 genes,8 taxa):Brassica oleraceaBol030667
ORTHOMCL11(177 genes,8 taxa):Brassica oleraceaBol032977
ORTHOMCL11(177 genes,8 taxa):Brassica oleraceaBol037625
ORTHOMCL11(177 genes,8 taxa):Brassica oleraceaBol037626
ORTHOMCL11(177 genes,8 taxa):Brassica oleraceaBol041338
ORTHOMCL11(177 genes,8 taxa):Brassica oleraceaBol041340
ORTHOMCL11(177 genes,8 taxa):Brassica oleraceaBol044225
ORTHOMCL11(177 genes,8 taxa):Brassica rapaBra000015
ORTHOMCL11(177 genes,8 taxa):Brassica rapaBra000319
ORTHOMCL11(177 genes,8 taxa):Brassica rapaBra000320
ORTHOMCL11(177 genes,8 taxa):Brassica rapaBra000880
ORTHOMCL11(177 genes,8 taxa):Brassica rapaBra000881
ORTHOMCL11(177 genes,8 taxa):Brassica rapaBra002064
ORTHOMCL11(177 genes,8 taxa):Brassica rapaBra002490
ORTHOMCL11(177 genes,8 taxa):Brassica rapaBra002497
ORTHOMCL11(177 genes,8 taxa):Brassica rapaBra002498
ORTHOMCL11(177 genes,8 taxa):Brassica rapaBra002499
ORTHOMCL11(177 genes,8 taxa):Brassica rapaBra002500
ORTHOMCL11(177 genes,8 taxa):Brassica rapaBra002597
ORTHOMCL11(177 genes,8 taxa):Brassica rapaBra003216
ORTHOMCL11(177 genes,8 taxa):Brassica rapaBra003386
ORTHOMCL11(177 genes,8 taxa):Brassica rapaBra004777
ORTHOMCL11(177 genes,8 taxa):Brassica rapaBra005168
ORTHOMCL11(177 genes,8 taxa):Brassica rapaBra006668
ORTHOMCL11(177 genes,8 taxa):Brassica rapaBra006669
ORTHOMCL11(177 genes,8 taxa):Brassica rapaBra006670
ORTHOMCL11(177 genes,8 taxa):Brassica rapaBra007028
ORTHOMCL11(177 genes,8 taxa):Brassica rapaBra007786
ORTHOMCL11(177 genes,8 taxa):Brassica rapaBra007896
ORTHOMCL11(177 genes,8 taxa):Brassica rapaBra010340
ORTHOMCL11(177 genes,8 taxa):Brassica rapaBra011080
ORTHOMCL11(177 genes,8 taxa):Brassica rapaBra014532
ORTHOMCL11(177 genes,8 taxa):Brassica rapaBra014736
ORTHOMCL11(177 genes,8 taxa):Brassica rapaBra016234
ORTHOMCL11(177 genes,8 taxa):Brassica rapaBra016235
ORTHOMCL11(177 genes,8 taxa):Brassica rapaBra018553
ORTHOMCL11(177 genes,8 taxa):Brassica rapaBra019469
ORTHOMCL11(177 genes,8 taxa):Brassica rapaBra020258
ORTHOMCL11(177 genes,8 taxa):Brassica rapaBra020259
ORTHOMCL11(177 genes,8 taxa):Brassica rapaBra020338
ORTHOMCL11(177 genes,8 taxa):Brassica rapaBra029544
ORTHOMCL11(177 genes,8 taxa):Brassica rapaBra033984
ORTHOMCL11(177 genes,8 taxa):Brassica rapaBra035326
ORTHOMCL11(177 genes,8 taxa):Brassica rapaBra036269
ORTHOMCL11(177 genes,8 taxa):Brassica rapaBra037688
ORTHOMCL11(177 genes,8 taxa):Brassica rapaBra038286
ORTHOMCL11(177 genes,8 taxa):Brassica rapaBra038287
ORTHOMCL11(177 genes,8 taxa):Brassica rapaBra038289
ORTHOMCL11(177 genes,8 taxa):Vitis viniferaGSVIVT01016502001
ORTHOMCL11(177 genes,8 taxa):Vitis viniferaGSVIVT01029708001
ORTHOMCL11(177 genes,8 taxa):Vitis viniferaGSVIVT01034126001
ORTHOMCL11(177 genes,8 taxa):Oryza sativaOs02t0297800-00
ORTHOMCL11(177 genes,8 taxa):Oryza sativaOs02t0640500-01
ORTHOMCL11(177 genes,8 taxa):Oryza sativaOs03t0258000-01
ORTHOMCL11(177 genes,8 taxa):Oryza sativaOs03t0258101-00
ORTHOMCL11(177 genes,8 taxa):Oryza sativaOs03t0772600-01
ORTHOMCL11(177 genes,8 taxa):Oryza sativaOs03t0823000-01
ORTHOMCL11(177 genes,8 taxa):Oryza sativaOs04t0531400-01
ORTHOMCL11(177 genes,8 taxa):Oryza sativaOs04t0531500-01
ORTHOMCL11(177 genes,8 taxa):Oryza sativaOs06t0253300-00
ORTHOMCL11(177 genes,8 taxa):Oryza sativaOs07t0129800-00
ORTHOMCL11(177 genes,8 taxa):Oryza sativaOs07t0129900-00
ORTHOMCL11(177 genes,8 taxa):Oryza sativaOs07t0130100-01
ORTHOMCL11(177 genes,8 taxa):Oryza sativaOs07t0130200-01
ORTHOMCL11(177 genes,8 taxa):Oryza sativaOs07t0130400-01
ORTHOMCL11(177 genes,8 taxa):Oryza sativaOs07t0130600-00
ORTHOMCL11(177 genes,8 taxa):Oryza sativaOs07t0130800-01
ORTHOMCL11(177 genes,8 taxa):Oryza sativaOs07t0130800-02
ORTHOMCL11(177 genes,8 taxa):Oryza sativaOs07t0130900-00
ORTHOMCL11(177 genes,8 taxa):Oryza sativaOs07t0131000-00
ORTHOMCL11(177 genes,8 taxa):Oryza sativaOs07t0131050-00
ORTHOMCL11(177 genes,8 taxa):Oryza sativaOs07t0131100-00
ORTHOMCL11(177 genes,8 taxa):Oryza sativaOs07t0131300-00
ORTHOMCL11(177 genes,8 taxa):Oryza sativaOs07t0131400-00
ORTHOMCL11(177 genes,8 taxa):Oryza sativaOs07t0131500-00
ORTHOMCL11(177 genes,8 taxa):Oryza sativaOs07t0131700-00
ORTHOMCL11(177 genes,8 taxa):Oryza sativaOs07t0132100-00
ORTHOMCL11(177 genes,8 taxa):Oryza sativaOs07t0132150-00
ORTHOMCL11(177 genes,8 taxa):Oryza sativaOs07t0283050-00
ORTHOMCL11(177 genes,8 taxa):Oryza sativaOs07t0283125-00
ORTHOMCL11(177 genes,8 taxa):Oryza sativaOs07t0575600-01
ORTHOMCL11(177 genes,8 taxa):Oryza sativaOs07t0575600-02
ORTHOMCL11(177 genes,8 taxa):Oryza sativaOs07t0575700-01
ORTHOMCL11(177 genes,8 taxa):Oryza sativaOs07t0575750-00
ORTHOMCL11(177 genes,8 taxa):Oryza sativaOs09t0268000-00
ORTHOMCL11(177 genes,8 taxa):Oryza sativaOs10t0441900-01
ORTHOMCL11(177 genes,8 taxa):Oryza sativaOs10t0442000-01
ORTHOMCL11(177 genes,8 taxa):Oryza sativaOs12t0574700-00
ORTHOMCL11(177 genes,8 taxa):Populus trichocarpaPOPTR_0001s25090.1
ORTHOMCL11(177 genes,8 taxa):Populus trichocarpaPOPTR_0003s19600.1
ORTHOMCL11(177 genes,8 taxa):Populus trichocarpaPOPTR_0006s08870.1
ORTHOMCL11(177 genes,8 taxa):Populus trichocarpaPOPTR_0006s08890.1
ORTHOMCL11(177 genes,8 taxa):Populus trichocarpaPOPTR_0006s08900.1
ORTHOMCL11(177 genes,8 taxa):Populus trichocarpaPOPTR_0006s08940.1
ORTHOMCL11(177 genes,8 taxa):Populus trichocarpaPOPTR_0006s08970.1
ORTHOMCL11(177 genes,8 taxa):Populus trichocarpaPOPTR_0008s05860.1
ORTHOMCL11(177 genes,8 taxa):Populus trichocarpaPOPTR_0009s04020.1
ORTHOMCL11(177 genes,8 taxa):Populus trichocarpaPOPTR_0009s04030.1
ORTHOMCL11(177 genes,8 taxa):Populus trichocarpaPOPTR_0009s04040.1
ORTHOMCL11(177 genes,8 taxa):Populus trichocarpaPOPTR_0009s04050.1
ORTHOMCL11(177 genes,8 taxa):Populus trichocarpaPOPTR_0009s04080.1
ORTHOMCL11(177 genes,8 taxa):Populus trichocarpaPOPTR_0009s04100.1
ORTHOMCL11(177 genes,8 taxa):Populus trichocarpaPOPTR_0009s04120.1
ORTHOMCL11(177 genes,8 taxa):Populus trichocarpaPOPTR_0010s20820.1
ORTHOMCL11(177 genes,8 taxa):Populus trichocarpaPOPTR_0016s10510.1
ORTHOMCL11(177 genes,8 taxa):Populus trichocarpaPOPTR_1407s00200.1
ORTHOMCL11(177 genes,8 taxa):Populus trichocarpaPOPTR_1896s00210.1
ORTHOMCL11(177 genes,8 taxa):Sorghum bicolorSb01g003020.1
ORTHOMCL11(177 genes,8 taxa):Sorghum bicolorSb01g003030.1
ORTHOMCL11(177 genes,8 taxa):Sorghum bicolorSb01g006760.1
ORTHOMCL11(177 genes,8 taxa):Sorghum bicolorSb01g006770.1
ORTHOMCL11(177 genes,8 taxa):Sorghum bicolorSb01g006780.1
ORTHOMCL11(177 genes,8 taxa):Sorghum bicolorSb01g020940.1
ORTHOMCL11(177 genes,8 taxa):Sorghum bicolorSb01g020950.1
ORTHOMCL11(177 genes,8 taxa):Sorghum bicolorSb01g020960.1
ORTHOMCL11(177 genes,8 taxa):Sorghum bicolorSb01g040590.1
ORTHOMCL11(177 genes,8 taxa):Sorghum bicolorSb02g002210.1
ORTHOMCL11(177 genes,8 taxa):Sorghum bicolorSb02g002220.1
ORTHOMCL11(177 genes,8 taxa):Sorghum bicolorSb02g002240.1
ORTHOMCL11(177 genes,8 taxa):Sorghum bicolorSb02g002250.1
ORTHOMCL11(177 genes,8 taxa):Sorghum bicolorSb02g002290.1
ORTHOMCL11(177 genes,8 taxa):Sorghum bicolorSb02g002330.1
ORTHOMCL11(177 genes,8 taxa):Sorghum bicolorSb02g009160.1
ORTHOMCL11(177 genes,8 taxa):Sorghum bicolorSb02g009170.1
ORTHOMCL11(177 genes,8 taxa):Sorghum bicolorSb02g037290.1
ORTHOMCL11(177 genes,8 taxa):Sorghum bicolorSb02g037300.1
ORTHOMCL11(177 genes,8 taxa):Sorghum bicolorSb04g012281.1
ORTHOMCL11(177 genes,8 taxa):Sorghum bicolorSb04g033790.1
ORTHOMCL11(177 genes,8 taxa):Sorghum bicolorSb06g023510.1
ORTHOMCL11(177 genes,8 taxa):Sorghum bicolorSb06g023520.1
ORTHOMCL11(177 genes,8 taxa):Sorghum bicolorSb07g003240.1
ORTHOMCL11(177 genes,8 taxa):Sorghum bicolorSb08g000750.1
ORTHOMCL11(177 genes,8 taxa):Sorghum bicolorSb08g019050.1
ORTHOMCL11(177 genes,8 taxa):Sorghum bicolorSb09g028870.1
ORTHOMCL11(177 genes,8 taxa):Sorghum bicolorSb09g028880.1
ORTHOMCL11(177 genes,8 taxa):Sorghum bicolorSb10g011000.1
ORTHOMCL11(177 genes,8 taxa):Sorghum bicolorSb10g011010.1
ORTHOMCL11(177 genes,8 taxa):Sorghum bicolorSb10g011150.1
ORTHOMCL11(177 genes,8 taxa):Sorghum bicolorSb10g011160.1
ORTHOMCL11(177 genes,8 taxa):Sorghum bicolorSb10g011170.1
ORTHOMCL11(177 genes,8 taxa):Carica papayaevm.TU.supercontig_1.426
ORTHOMCL11(177 genes,8 taxa):Carica papayaevm.TU.supercontig_228.2
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC04:3917811..5616568 (+)A.thalianaChr3:19440739..20048572 (+)42
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC04:3917811..5358645 (+)B.rapaA09:10363014..11093137 (+)32
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
JAT2G377101581471815817004Chr2Subgenome_III(LF)512
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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