Basic Information
Gene Model:Bol025551
Gene Family:Not classificated
Chromosome:C04
Scaffold:Scaffold000087_P2
Sequence:
 | 
Gene Structure
Nucleotide Length:2153 bp
Transcript Length:1116 bp
Protein Length:371 aa
Strand:-
Location:C04: 4919009 : 4921161
Gene CDSs(6): 1-214 | 293-444 | 525-686 | 763-1114 | 1216-1278 | 1981-2153 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF00892DUF6 187 317 1.8e-07IPR000620Protein of unknown function DUF6, transmembrane
HMMPfamPF00892DUF6 15 148 6.7e-14IPR000620Protein of unknown function DUF6, transmembrane
superfamilySSF103481Multidrug resistance 40 155 3.5e-09Not foundNot found
superfamilySSF103481Multidrug resistance 212 324 3e-10Not foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0016020 Cellular Component membrane
Swiss-Prot
Best HitE_value Description
Q6J1635e-495NG4_PINTA Auxin-induced protein 5NG4 OS=Pinus taeda PE=2 SV=1
TrEMBL
Best HitE_value Description
Q9ZUS10.0Q9ZUS1_ARATH Nodulin-like protein OS=Arabidopsis thaliana GN=At2g37460/F3G5.25 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL9603(8 genes,6 taxa):Arabidopsis thalianaAT2G37460.1
ORTHOMCL9603(8 genes,6 taxa):Brassica oleraceaBol025551
ORTHOMCL9603(8 genes,6 taxa):Brassica rapaBra000002
ORTHOMCL9603(8 genes,6 taxa):Brassica rapaBra005193
ORTHOMCL9603(8 genes,6 taxa):Brassica rapaBra017186
ORTHOMCL9603(8 genes,6 taxa):Vitis viniferaGSVIVT01025616001
ORTHOMCL9603(8 genes,6 taxa):Populus trichocarpaPOPTR_0006s08270.1
ORTHOMCL9603(8 genes,6 taxa):Carica papayaevm.TU.supercontig_163.26
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC04:3917811..5616568 (+)A.thalianaChr3:19440739..20048572 (+)42
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC04:3917811..5358645 (+)B.rapaA09:10363014..11093137 (+)32
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
JAT2G374601572644815729098Chr2Subgenome_III(LF)512
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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