Basic Information
Gene Model:Bol025491
Gene Family:Not classificated
Chromosome:Cun
Scaffold:Scaffold000087_P1
Sequence:
 | 
Gene Structure
Nucleotide Length:603 bp
Transcript Length:603 bp
Protein Length:200 aa
Strand:-
Location:Scaffold000087_P1: 713331 : 713933
Gene CDSs(1): 1-603 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF01988DUF125 30 194 1.4e-61IPR008217Protein of unknown function DUF125, transmembrane
Segsegseg 115 127 NANot foundNot found
Gene Ontology
GO TermGO TypeDescription

Note: this gene was not detected its best hit in Swiss-Prot database.

Swiss-Prot
Best HitE_value Description
P163137e-53NO21_SOYBN Nodulin-21 OS=Glycine max PE=2 SV=1
TrEMBL
Best HitE_value Description
Q9M2C05e-95Q9M2C0_ARATH Nodulin-like protein OS=Arabidopsis thaliana GN=F23N14_40 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL25841(2 genes,2 taxa):Brassica oleraceaBol025491
ORTHOMCL25841(2 genes,2 taxa):Brassica rapaBra012271
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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