Basic Information
Gene Model:Bol025472
Gene Family:Not classificated
Chromosome:Cun
Scaffold:Scaffold000087_P1
Sequence:
 | 
Gene Structure
Nucleotide Length:2790 bp
Transcript Length:1170 bp
Protein Length:389 aa
Strand:-
Location:Scaffold000087_P1: 335766 : 338555
Gene CDSs(13): 1-96 | 195-287 | 552-602 | 708-774 | 987-1053 | 1117-1165 | 1252-1374 | 1475-1567 | 1798-1843 | 1928-1980 | 2162-2201 | 2293-2426 | 2533-2790 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Segsegseg 214 228 NANot foundNot found
HMMPantherPTHR13964RBP-RELATED 83 183 0.00022Not foundNot found
HMMSmartSM00501no description 97 188 1.9e-24IPR001606AT-rich interaction region
ProfileScanPS51011ARID 96 187 21.711IPR001606AT-rich interaction region
ProfileScanPS01031HSP20 306 387 10.402IPR002068Heat shock protein Hsp20
superfamilySSF49764HSP20-like chaperone 298 386 2.7e-09IPR008978HSP20-like chaperone
superfamilySSF46774ARID-like 78 198 1.8e-24IPR001606AT-rich interaction region
Gene3DG3DSA:1.10.150.60no description 77 203 1.1e-22IPR001606AT-rich interaction region
HMMPfamPF01388ARID 131 183 5.5e-09IPR001606AT-rich interaction region
Gene Ontology
GO TermGO TypeDescription
GO:0003677 Molecular Function DNA binding
GO:0005622 Cellular Component intracellular
Swiss-Prot
Best HitE_value Description
Q3SWY15e-08ARI5A_BOVIN AT-rich interactive domain-containing protein 5A OS=Bos taurus GN=ARID5A PE=2 SV=1
TrEMBL
Best HitE_value Description
C0SUW71e-138C0SUW7_ARATH Putative uncharacterized protein At1g20910 (Fragment) OS=Arabidopsis thaliana GN=At1g20910 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
nve:NEMVE_v1g429716e-07K11765ARID2AT-rich interactive domain-containing protein 2
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL9351(8 genes,6 taxa):Arabidopsis thalianaAT1G76510.1
ORTHOMCL9351(8 genes,6 taxa):Brassica oleraceaBol025472
ORTHOMCL9351(8 genes,6 taxa):Brassica oleraceaBol027623
ORTHOMCL9351(8 genes,6 taxa):Brassica rapaBra012257
ORTHOMCL9351(8 genes,6 taxa):Brassica rapaBra015737
ORTHOMCL9351(8 genes,6 taxa):Vitis viniferaGSVIVT01013439001
ORTHOMCL9351(8 genes,6 taxa):Populus trichocarpaPOPTR_0002s00550.1
ORTHOMCL9351(8 genes,6 taxa):Carica papayaevm.TU.supercontig_26.2
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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