Basic Information
Gene Model:Bol025391
Gene Family:Not classificated
Chromosome:C04
Scaffold:Scaffold000088
Sequence:
 | 
Gene Structure
Nucleotide Length:1193 bp
Transcript Length:1041 bp
Protein Length:346 aa
Strand:+
Location:C04: 38475256 : 38476448
Gene CDSs(3): 1-696 | 766-945 | 1029-1193 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Segsegseg 10 19 NANot foundNot found
Segsegseg 142 148 NANot foundNot found
superfamilySSF81606Protein serine/threo 61 342 3e-71IPR001932Protein phosphatase 2C-related
PatternScanPS01032PP2C 116 124 NAIPR000222Protein phosphatase 2C, manganese/magnesium aspartate binding site
HMMPfamPF00481PP2C 81 334 4.2e-72IPR014045Protein phosphatase 2C, N-terminal
Gene3DG3DSA:3.60.40.10no description 83 343 1.7e-68IPR001932Protein phosphatase 2C-related
HMMSmartSM00332no description 75 339 9.2e-81IPR001932Protein phosphatase 2C-related
HMMSmartSM00331no description 78 341 0.0014IPR001932Protein phosphatase 2C-related
HMMPantherPTHR13832:SF87PROTEIN PHOSPHATASE 83 343 2e-100Not foundNot found
HMMPantherPTHR13832PROTEIN PHOSPHATASE 83 343 2e-100IPR015655Protein phosphatase 2C
Gene Ontology
GO TermGO TypeDescription
GO:0003824 Molecular Function catalytic activity
GO:0004722 Molecular Function protein serine/threonine phosphatase activity
GO:0006470 Biological Process protein dephosphorylation
GO:0008287 Cellular Component protein serine/threonine phosphatase complex
Swiss-Prot
Best HitE_value Description
Q9XEE81e-131P2C30_ARATH Probable protein phosphatase 2C 30 OS=Arabidopsis thaliana GN=PP2C5 PE=2 SV=1
TrEMBL
Best HitE_value Description
A7Q3K05e-98A7Q3K0_VITVI Chromosome chr13 scaffold_48, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00029318001 PE=3 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL25825(2 genes,2 taxa):Brassica oleraceaBol025391
ORTHOMCL25825(2 genes,2 taxa):Brassica rapaBra017025
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC04:38193756..38673847 (+)A.thalianaChr3:20557899..20862265 (+)19
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC04:38057067..38673847 (+)B.rapaA09:11617294..12253370 (+)21
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
JAT2G401801678252216784147Chr2Subgenome_I375
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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