Basic Information
Gene Model:Bol025388
Gene Family:Transcription Factor Families
Chromosome:C04
Scaffold:Scaffold000088
Sequence:
 | 
Gene Structure
Nucleotide Length:870 bp
Transcript Length:741 bp
Protein Length:246 aa
Strand:+
Location:C04: 38462526 : 38463395
Gene CDSs(2): 1-153 | 283-870 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF02362B3 115 224 1.3e-08IPR003340Transcriptional factor B3
Gene Ontology
GO TermGO TypeDescription
GO:0003677 Molecular Function DNA binding
GO:0006355 Biological Process regulation of transcription, DNA-dependent
Swiss-Prot
Best HitE_value Description
Q9ZR146e-43Y4317_ARATH Putative B3 domain-containing protein At4g03170 OS=Arabidopsis thaliana GN=At4g03170 PE=2 SV=1
TrEMBL
Best HitE_value Description
B9N1E34e-19B9N1E3_POPTR Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_579432 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL12547(6 genes,5 taxa):Arabidopsis thalianaAT1G20600.1
ORTHOMCL12547(6 genes,5 taxa):Arabidopsis thalianaAT4G03170.1
ORTHOMCL12547(6 genes,5 taxa):Brassica oleraceaBol025388
ORTHOMCL12547(6 genes,5 taxa):Brassica rapaBra017028
ORTHOMCL12547(6 genes,5 taxa):Populus trichocarpaPOPTR_0008s20410.1
ORTHOMCL12547(6 genes,5 taxa):Carica papayaevm.TU.supercontig_81.87
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC04:38193756..38673847 (+)A.thalianaChr3:20557899..20862265 (+)19
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC04:38057067..38673847 (+)B.rapaA09:11617294..12253370 (+)21
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


logo