Basic Information
Gene Model:Bol025345
Gene Family:Not classificated
Chromosome:C04
Scaffold:Scaffold000088
Sequence:
 | 
Gene Structure
Nucleotide Length:2074 bp
Transcript Length:819 bp
Protein Length:272 aa
Strand:-
Location:C04: 38143268 : 38145341
Gene CDSs(6): 1-57 | 851-1012 | 1103-1343 | 1436-1552 | 1657-1719 | 1896-2074 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
superfamilySSF103481Multidrug resistance 42 157 1.4e-10Not foundNot found
HMMPfamPF00892DUF6 17 150 6.7e-18IPR000620Protein of unknown function DUF6, transmembrane
Gene Ontology
GO TermGO TypeDescription
GO:0016020 Cellular Component membrane
Swiss-Prot
Best HitE_value Description
Q6J1631e-355NG4_PINTA Auxin-induced protein 5NG4 OS=Pinus taeda PE=2 SV=1
TrEMBL
Best HitE_value Description
O806381e-134O80638_ARATH Nodulin-like protein OS=Arabidopsis thaliana GN=At2g39510 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List

Note: the orthologous genes of this gene was not detected by OrthoMCL software with default parameters.

Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC04:34667219..39428485 (+)A.thalianaChr2:13829420..17464161 (+)433
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC04:38057067..38673847 (+)B.rapaA09:11617294..12253370 (+)21
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
JAT2G395101649114316493151Chr2Subgenome_I375
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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