Basic Information
Gene Model:Bol025321
Gene Family:Not classificated
Gene Structure
Nucleotide Length:252 bp
Transcript Length:165 bp
Protein Length:54 aa
Location:C04: 37963701 : 37963952
Gene CDSs(2): 1-84 | 172-252 |
Protein Sequence Features
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPantherPTHR21659HYDROPHOBIC PROTEIN 1 54 2.9e-24IPR000612Uncharacterised protein family UPF0057
PatternScanPS01309UPF0057 10 25 NAIPR000612Uncharacterised protein family UPF0057
HMMPfamPF01679UPF0057 4 54 6.1e-26IPR000612Uncharacterised protein family UPF0057
Gene Ontology
GO TermGO TypeDescription
GO:0016021 Cellular Component integral to membrane
Best HitE_value Description
P681793e-18LT01_HORVU Low temperature-induced protein lt101.1 OS=Hordeum vulgare GN=LT101.1 PE=2 SV=1
Best HitE_value Description
Q941D78e-20Q941D7_ARATH Expressed protein OS=Arabidopsis thaliana GN=At2g38905 PE=2 SV=1
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
OrthoMCL GroupSpeciesGene List
ORTHOMCL6043(10 genes,7 taxa):Arabidopsis thalianaAT2G38905.1
ORTHOMCL6043(10 genes,7 taxa):Brassica oleraceaBol020394
ORTHOMCL6043(10 genes,7 taxa):Brassica oleraceaBol025321
ORTHOMCL6043(10 genes,7 taxa):Brassica rapaBra000104
ORTHOMCL6043(10 genes,7 taxa):Brassica rapaBra017095
ORTHOMCL6043(10 genes,7 taxa):Vitis viniferaGSVIVT01025602001
ORTHOMCL6043(10 genes,7 taxa):Oryza sativaOs03t0286900-01
ORTHOMCL6043(10 genes,7 taxa):Populus trichocarpaPOPTR_0008s04390.1
ORTHOMCL6043(10 genes,7 taxa):Sorghum bicolorSb01g038670.1
ORTHOMCL6043(10 genes,7 taxa):Sorghum bicolorSb09g002150.1
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC04:34667219..39428485 (+)A.thalianaChr2:13829420..17464161 (+)433
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC04:36001245..39438221 (+)B.rapaA04:13470192..15803677 (-)335
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.