Basic Information
Gene Model:Bol025275
Gene Family:Not classificated
Chromosome:C04
Scaffold:Scaffold000088
Sequence:
 | 
Gene Structure
Nucleotide Length:3127 bp
Transcript Length:1548 bp
Protein Length:515 aa
Strand:-
Location:C04: 37559442 : 37562568
Gene CDSs(8): 1-170 | 263-296 | 419-556 | 627-773 | 851-895 | 996-1350 | 1428-1654 | 2696-3127 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Segsegseg 77 95 NANot foundNot found
Segsegseg 43 60 NANot foundNot found
superfamilySSF103473MFS general substrat 67 508 1e-80IPR016196Major facilitator superfamily, general substrate transporter
ProfileScanPS50850MFS 104 512 23.628Not foundNot found
HMMPantherPTHR11662SODIUM-DEPENDENT PHO 40 514 4.2e-262Not foundNot found
HMMPantherPTHR11662:SF23SODIUM-DEPENDENT PHO 40 514 4.2e-262Not foundNot found
HMMPfamPF07690MFS_1 107 474 9.8e-51IPR011701Major facilitator superfamily MFS-1
Gene Ontology
GO TermGO TypeDescription
GO:0055085 Biological Process transmembrane transport
Swiss-Prot
Best HitE_value Description
Q7XJR20.0ANTR3_ARATH Probable anion transporter 3, chloroplastic OS=Arabidopsis thaliana GN=ANTR3 PE=2 SV=2
TrEMBL
Best HitE_value Description
B9SPE00.0B9SPE0_RICCO Sialin, putative OS=Ricinus communis GN=RCOM_0084940 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
olu:OSTLU_29271e-105K08193SLC17AMFS transporter, ACS family, solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), other
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL9609(8 genes,8 taxa):Arabidopsis thalianaAT2G38060.1
ORTHOMCL9609(8 genes,8 taxa):Brassica oleraceaBol025275
ORTHOMCL9609(8 genes,8 taxa):Brassica rapaBra017141
ORTHOMCL9609(8 genes,8 taxa):Vitis viniferaGSVIVT01034012001
ORTHOMCL9609(8 genes,8 taxa):Oryza sativaOs05t0451100-01
ORTHOMCL9609(8 genes,8 taxa):Populus trichocarpaPOPTR_0016s11850.1
ORTHOMCL9609(8 genes,8 taxa):Sorghum bicolorSb09g022090.1
ORTHOMCL9609(8 genes,8 taxa):Carica papayaevm.TU.supercontig_56.94
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC04:36396141..37787728 (+)A.thalianaChr3:19407023..20112944 (+)40
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC04:34712153..37938243 (+)B.rapaA05:20289850..23204782 (-)186
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
JAT2G380601592255715925623Chr2Subgenome_I375
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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