Basic Information
Gene Model:Bol025231
Gene Family:Not classificated
Chromosome:C04
Scaffold:Scaffold000088
Sequence:
 | 
Gene Structure
Nucleotide Length:2647 bp
Transcript Length:1125 bp
Protein Length:374 aa
Strand:-
Location:C04: 37293871 : 37296517
Gene CDSs(6): 1-196 | 286-437 | 518-679 | 759-1110 | 1224-1286 | 2448-2647 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF00892DUF6 196 326 1e-05IPR000620Protein of unknown function DUF6, transmembrane
HMMPfamPF00892DUF6 24 157 1.7e-09IPR000620Protein of unknown function DUF6, transmembrane
superfamilySSF103481Multidrug resistance 221 333 3.6e-10Not foundNot found
superfamilySSF103481Multidrug resistance 49 164 6.6e-07Not foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0016020 Cellular Component membrane
Swiss-Prot
Best HitE_value Description
Q6J1632e-455NG4_PINTA Auxin-induced protein 5NG4 OS=Pinus taeda PE=2 SV=1
TrEMBL
Best HitE_value Description
Q9ZUS11e-170Q9ZUS1_ARATH Nodulin-like protein OS=Arabidopsis thaliana GN=At2g37460/F3G5.25 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL25811(2 genes,2 taxa):Brassica oleraceaBol025231
ORTHOMCL25811(2 genes,2 taxa):Brassica rapaBra017185
Tandem Duplication
ClusterGene Num.Gene List
Cluster_11332Bol025230 Bol025231 
Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC04:36396141..37787728 (+)A.thalianaChr3:19407023..20112944 (+)40
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC04:36466488..37499835 (+)B.rapaA09:10284578..11183378 (+)26
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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