Basic Information
Gene Model:Bol025107
Gene Family:Transcription Factor Families
Chromosome:C08
Scaffold:Scaffold000089
Sequence:
 | 
Gene Structure
Nucleotide Length:1215 bp
Transcript Length:720 bp
Protein Length:239 aa
Strand:-
Location:C08: 28369559 : 28370773
Gene CDSs(5): 1-243 | 322-401 | 472-717 | 793-865 | 1138-1215 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Segsegseg 87 116 NANot foundNot found
HMMPfamPF02362B3 51 81 9.2e-07IPR003340Transcriptional factor B3
Gene3DG3DSA:2.40.330.10no description 3 81 6.5e-15Not foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0003677 Molecular Function DNA binding
GO:0006355 Biological Process regulation of transcription, DNA-dependent
Swiss-Prot
Best HitE_value Description
Q8LAV59e-58REM20_ARATH B3 domain-containing protein REM20 OS=Arabidopsis thaliana GN=REM20 PE=2 SV=1
TrEMBL
Best HitE_value Description
C0SUV71e-07C0SUV7_ARATH Putative uncharacterized protein At1g16640 (Fragment) OS=Arabidopsis thaliana GN=At1g16640 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List

Note: the orthologous genes of this gene was not detected by OrthoMCL software with default parameters.

Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC08:27377536..29026956 (+)A.thalianaChr3:19197337..20197650 (+)165
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC08:27373536..34472409 (+)B.rapaA09:10065156..15472209 (+)727
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
NAT3G533101976666419768599Chr3Subgenome_III(LF)368
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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