Basic Information
Gene Model:Bol025075
Gene Family:Protein Kinase Gene Families
Chromosome:C08
Scaffold:Scaffold000089
Sequence:
 | 
Gene Structure
Nucleotide Length:1899 bp
Transcript Length:1395 bp
Protein Length:464 aa
Strand:+
Location:C08: 28059502 : 28061400
Gene CDSs(2): 1-542 | 1047-1899 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPantherPTHR22985SERINE/THREONINE PRO 49 435 7.1e-215Not foundNot found
HMMPantherPTHR22985:SF88NONPHOTOTROPIC HYPOC 49 435 7.1e-215Not foundNot found
PatternScanPS00108PROTEIN_KINASE_ST 199 211 NAIPR008271Serine/threonine-protein kinase, active site
superfamilySSF56112Protein kinase-like 53 440 1.5e-81IPR011009Protein kinase-like domain
Gene3DG3DSA:1.10.510.10no description 130 418 3.2e-57Not foundNot found
Segsegseg 436 444 NANot foundNot found
Segsegseg 30 46 NANot foundNot found
Segsegseg 232 241 NANot foundNot found
HMMSmartSM00219no description 78 407 4.9e-07IPR020635Tyrosine-protein kinase, subgroup, catalytic domain
HMMSmartSM00220no description 78 413 1.6e-91IPR002290Serine/threonine-protein kinase domain
HMMPfamPF00069Pkinase 78 413 1.8e-68IPR017442Serine/threonine-protein kinase-like domain
ProfileScanPS50011PROTEIN_KINASE_DOM 78 413 44.612IPR000719Protein kinase, catalytic domain
Gene Ontology
GO TermGO TypeDescription
GO:0004672 Molecular Function protein kinase activity
GO:0004674 Molecular Function protein serine/threonine kinase activity
GO:0005524 Molecular Function ATP binding
GO:0006468 Biological Process protein phosphorylation
Swiss-Prot
Best HitE_value Description
Q0DCT81e-148G11A_ORYSJ Protein kinase G11A OS=Oryza sativa subsp. japonica GN=Os06g0291600 PE=2 SV=1
TrEMBL
Best HitE_value Description
Q9LFA20.0Q9LFA2_ARATH Protein kinase-like OS=Arabidopsis thaliana GN=F8J2_60 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL801(22 genes,8 taxa):Arabidopsis thalianaAT2G36350.1
ORTHOMCL801(22 genes,8 taxa):Arabidopsis thalianaAT3G52890.1
ORTHOMCL801(22 genes,8 taxa):Arabidopsis thalianaAT5G03640.1
ORTHOMCL801(22 genes,8 taxa):Brassica oleraceaBol010042
ORTHOMCL801(22 genes,8 taxa):Brassica oleraceaBol011727
ORTHOMCL801(22 genes,8 taxa):Brassica oleraceaBol025075
ORTHOMCL801(22 genes,8 taxa):Brassica oleraceaBol036321
ORTHOMCL801(22 genes,8 taxa):Brassica rapaBra005280
ORTHOMCL801(22 genes,8 taxa):Brassica rapaBra006955
ORTHOMCL801(22 genes,8 taxa):Brassica rapaBra009522
ORTHOMCL801(22 genes,8 taxa):Brassica rapaBra019641
ORTHOMCL801(22 genes,8 taxa):Brassica rapaBra028538
ORTHOMCL801(22 genes,8 taxa):Vitis viniferaGSVIVT01031372001
ORTHOMCL801(22 genes,8 taxa):Vitis viniferaGSVIVT01033816001
ORTHOMCL801(22 genes,8 taxa):Oryza sativaOs04t0410200-00
ORTHOMCL801(22 genes,8 taxa):Oryza sativaOs12t0480200-01
ORTHOMCL801(22 genes,8 taxa):Populus trichocarpaPOPTR_0004s19740.1
ORTHOMCL801(22 genes,8 taxa):Populus trichocarpaPOPTR_0006s11580.1
ORTHOMCL801(22 genes,8 taxa):Populus trichocarpaPOPTR_0009s14910.1
ORTHOMCL801(22 genes,8 taxa):Sorghum bicolorSb06g015430.1
ORTHOMCL801(22 genes,8 taxa):Sorghum bicolorSb08g014350.1
ORTHOMCL801(22 genes,8 taxa):Carica papayaevm.TU.supercontig_47.74
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC08:27377536..29026956 (+)A.thalianaChr3:19197337..20197650 (+)165
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC08:27373536..34472409 (+)B.rapaA09:10065156..15472209 (+)727
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
NAT3G528901960843119612186Chr3Subgenome_III(LF)368
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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