Basic Information
Gene Model:Bol025025
Gene Family:Protein tyrosine phosphatase (PTP) family
Chromosome:C08
Scaffold:Scaffold000089
Sequence:
 | 
Gene Structure
Nucleotide Length:2859 bp
Transcript Length:1134 bp
Protein Length:377 aa
Strand:-
Location:C08: 27557632 : 27560490
Gene CDSs(14): 1-132 | 216-323 | 414-473 | 647-742 | 855-911 | 1174-1233 | 1468-1600 | 1778-1858 | 1969-2045 | 2135-2211 | 2331-2439 | 2500-2544 | 2636-2708 | 2834-2859 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF01497Peripla_BP_2 99 136 0.00028IPR002491Periplasmic binding protein
HMMPfamPF00782DSPc 145 233 5.2e-07IPR000340Dual specificity phosphatase, catalytic domain
superfamilySSF52799(Phosphotyrosine pro 93 230 8e-23Not foundNot found
HMMPantherPTHR103435'-AMP-ACTIVATED PRO 267 335 3.7e-07Not foundNot found
HMMPantherPTHR10343:SF105-AMP-ACTIVATED PROT 267 335 3.7e-07Not foundNot found
Gene3DG3DSA:3.90.190.10no description 68 240 5.1e-22Not foundNot found
Segsegseg 198 209 NANot foundNot found
Segsegseg 247 262 NANot foundNot found
Segsegseg 64 73 NANot foundNot found
ProfileScanPS50056TYR_PHOSPHATASE_2 172 230 10.606IPR000387Dual-specific/protein-tyrosine phosphatase, conserved region
Gene Ontology
GO TermGO TypeDescription
GO:0005381 Molecular Function iron ion transmembrane transporter activity
GO:0006470 Biological Process protein dephosphorylation
GO:0006827 Biological Process high-affinity iron ion transport
GO:0008138 Molecular Function protein tyrosine/serine/threonine phosphatase activity
GO:0016311 Biological Process dephosphorylation
GO:0016791 Molecular Function phosphatase activity
Swiss-Prot
Best HitE_value Description

Note: best hit of this gene was not detected in Swiss-Prot database.

TrEMBL
Best HitE_value Description
Q944A80.0Q944A8_ARATH AT3g52180/F4F15_290 OS=Arabidopsis thaliana PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL3147(13 genes,8 taxa):Arabidopsis thalianaAT3G52180.1
ORTHOMCL3147(13 genes,8 taxa):Brassica oleraceaBol025025
ORTHOMCL3147(13 genes,8 taxa):Brassica rapaBra006905
ORTHOMCL3147(13 genes,8 taxa):Brassica rapaBra006908
ORTHOMCL3147(13 genes,8 taxa):Brassica rapaBra033449
ORTHOMCL3147(13 genes,8 taxa):Vitis viniferaGSVIVT01005023001
ORTHOMCL3147(13 genes,8 taxa):Oryza sativaOs03t0107800-01
ORTHOMCL3147(13 genes,8 taxa):Oryza sativaOs03t0107800-02
ORTHOMCL3147(13 genes,8 taxa):Populus trichocarpaPOPTR_0008s02930.1
ORTHOMCL3147(13 genes,8 taxa):Populus trichocarpaPOPTR_0008s02930.2
ORTHOMCL3147(13 genes,8 taxa):Populus trichocarpaPOPTR_0010s23850.1
ORTHOMCL3147(13 genes,8 taxa):Sorghum bicolorSb01g050120.2
ORTHOMCL3147(13 genes,8 taxa):Carica papayaevm.TU.supercontig_128.70
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC08:27377536..29026956 (+)A.thalianaChr3:19197337..20197650 (+)165
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC08:27373536..34472409 (+)B.rapaA09:10065156..15472209 (+)727
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
NAT3G521801934965219353596Chr3Subgenome_III(LF)368
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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