Basic Information
Gene Model:Bol024978
Gene Family:Amino Acid/Auxin Permease AAAP Family
Chromosome:C03
Scaffold:Scaffold000090
Sequence:
 | 
Gene Structure
Nucleotide Length:3973 bp
Transcript Length:1323 bp
Protein Length:440 aa
Strand:+
Location:C03: 40591302 : 40595274
Gene CDSs(7): 1-33 | 116-261 | 1088-1471 | 2916-3415 | 3501-3592 | 3701-3769 | 3875-3973 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPantherPTHR22950AMINO ACID TRANSPORT 16 439 1.2e-102Not foundNot found
Segsegseg 363 385 NANot foundNot found
HMMPfamPF01490Aa_trans 28 427 1.4e-138IPR013057Amino acid transporter, transmembrane
Gene Ontology
GO TermGO TypeDescription

Note: this gene was not detected its best hit in Swiss-Prot database.

Swiss-Prot
Best HitE_value Description
Q9C6M20.0LHTL6_ARATH Lysine histidine transporter-like 6 OS=Arabidopsis thaliana GN=At1g25530 PE=2 SV=1
TrEMBL
Best HitE_value Description
B9HJ040.0B9HJ04_POPTR Lysine/histidine transporter OS=Populus trichocarpa GN=PtrLHT6 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL5655(10 genes,8 taxa):Arabidopsis thalianaAT1G25530.1
ORTHOMCL5655(10 genes,8 taxa):Brassica oleraceaBol024978
ORTHOMCL5655(10 genes,8 taxa):Brassica rapaBra011000
ORTHOMCL5655(10 genes,8 taxa):Brassica rapaBra024738
ORTHOMCL5655(10 genes,8 taxa):Vitis viniferaGSVIVT01011938001
ORTHOMCL5655(10 genes,8 taxa):Oryza sativaOs04t0462400-01
ORTHOMCL5655(10 genes,8 taxa):Populus trichocarpaPOPTR_0008s11680.1
ORTHOMCL5655(10 genes,8 taxa):Populus trichocarpaPOPTR_0010s13840.1
ORTHOMCL5655(10 genes,8 taxa):Sorghum bicolorSb06g019090.1
ORTHOMCL5655(10 genes,8 taxa):Carica papayaevm.TU.supercontig_1.207
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:40139727..40648922 (-)A.thalianaChr1:8889110..9225775 (+)32
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:39908906..40648922 (+)B.rapaA09:20380492..21162092 (+)23
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
BAT1G2553089645448967428Chr1Subgenome_II30
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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