Basic Information
Gene Model:Bol024976
Gene Family:Transcription Factor Families
Chromosome:C03
Scaffold:Scaffold000090
Sequence:
 | 
Gene Structure
Nucleotide Length:1005 bp
Transcript Length:1005 bp
Protein Length:334 aa
Strand:+
Location:C03: 40557372 : 40558376
Gene CDSs(1): 1-1005 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
ProfileScanPS51032AP2_ERF 43 98 19.454IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
ProfileScanPS50863B3 167 273 14.522IPR003340Transcriptional factor B3
Segsegseg 294 304 NANot foundNot found
Gene3DG3DSA:2.40.330.10no description 154 285 1.6e-37Not foundNot found
Gene3DG3DSA:3.30.730.10no description 42 101 6.9e-16IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
HMMSmartSM00380no description 43 104 6.9e-28IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
superfamilySSF54171DNA-binding domain 42 101 2.9e-18IPR016177DNA-binding, integrase-type
HMMPfamPF02362B3 166 275 7e-36IPR003340Transcriptional factor B3
HMMPfamPF00847AP2 42 91 8.1e-13IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
Gene Ontology
GO TermGO TypeDescription
GO:0003677 Molecular Function DNA binding
GO:0003700 Molecular Function sequence-specific DNA binding transcription factor activity
GO:0006355 Biological Process regulation of transcription, DNA-dependent
Swiss-Prot
Best HitE_value Description
Q9C6M51e-150RAVL1_ARATH AP2/ERF and B3 domain-containing transcription repressor TEM1 OS=Arabidopsis thaliana GN=TEM1 PE=1 SV=1
TrEMBL
Best HitE_value Description
B9HWL71e-117B9HWL7_POPTR AP2 domain-containing transcription factor OS=Populus trichocarpa GN=RAV1 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL25795(2 genes,2 taxa):Brassica oleraceaBol024976
ORTHOMCL25795(2 genes,2 taxa):Brassica rapaBra011002
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:40139727..40648922 (-)A.thalianaChr1:8889110..9225775 (+)32
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:39908906..40648922 (+)B.rapaA09:20380492..21162092 (+)23
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
BAT1G2556089816778983041Chr1Subgenome_II30
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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