Basic Information
Gene Model:Bol024901
Gene Family:Transcription Factor Families
Chromosome:C03
Scaffold:Scaffold000090
Sequence:
 | 
Gene Structure
Nucleotide Length:4427 bp
Transcript Length:1830 bp
Protein Length:609 aa
Strand:-
Location:C03: 39676100 : 39680526
Gene CDSs(13): 1-526 | 1331-1344 | 1565-1875 | 1987-2083 | 2175-2247 | 2314-2427 | 2524-2691 | 2761-2851 | 2928-3012 | 3083-3226 | 3320-3376 | 3484-3579 | 4374-4427 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
ProfileScanPS50863B3 88 190 12.548IPR003340Transcriptional factor B3
Segsegseg 403 419 NANot foundNot found
Segsegseg 466 477 NANot foundNot found
Segsegseg 504 534 NANot foundNot found
Segsegseg 348 353 NANot foundNot found
Segsegseg 374 382 NANot foundNot found
Gene3DG3DSA:2.40.330.10no description 75 205 3.8e-30Not foundNot found
HMMPfamPF02362B3 87 192 1.2e-25IPR003340Transcriptional factor B3
HMMPfamPF06507Auxin_resp 215 294 2.5e-34IPR010525Auxin response factor
Gene Ontology
GO TermGO TypeDescription
GO:0003677 Molecular Function DNA binding
GO:0005634 Cellular Component nucleus
GO:0006355 Biological Process regulation of transcription, DNA-dependent
GO:0009725 Biological Process response to hormone stimulus
GO:0045449 Biological Process regulation of transcription
Swiss-Prot
Best HitE_value Description
Q9C8N91e-117ARFU_ARATH Putative auxin response factor 21 OS=Arabidopsis thaliana GN=ARF21 PE=2 SV=2
TrEMBL
Best HitE_value Description
C0SUZ11e-110C0SUZ1_ARATH Putative uncharacterized protein At1g34310 (Fragment) OS=Arabidopsis thaliana GN=At1g34310 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL5442(11 genes,2 taxa):Brassica oleraceaBol006390
ORTHOMCL5442(11 genes,2 taxa):Brassica oleraceaBol020075
ORTHOMCL5442(11 genes,2 taxa):Brassica oleraceaBol024901
ORTHOMCL5442(11 genes,2 taxa):Brassica oleraceaBol027367
ORTHOMCL5442(11 genes,2 taxa):Brassica oleraceaBol032178
ORTHOMCL5442(11 genes,2 taxa):Brassica oleraceaBol032614
ORTHOMCL5442(11 genes,2 taxa):Brassica oleraceaBol035354
ORTHOMCL5442(11 genes,2 taxa):Brassica rapaBra017362
ORTHOMCL5442(11 genes,2 taxa):Brassica rapaBra018124
ORTHOMCL5442(11 genes,2 taxa):Brassica rapaBra027944
ORTHOMCL5442(11 genes,2 taxa):Brassica rapaBra034234
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:38950224..40121817 (+)A.thalianaChr3:17313646..17712866 (+)43
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:38950224..40121817 (+)B.rapaA06:24336555..24961468 (-)49
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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