Basic Information
Gene Model:Bol024821
Gene Family:Transcription Factor Families
Chromosome:Cun
Scaffold:Scaffold000091
Sequence:
 | 
Gene Structure
Nucleotide Length:3944 bp
Transcript Length:2034 bp
Protein Length:677 aa
Strand:+
Location:Scaffold000091: 1394277 : 1398220
Gene CDSs(9): 1-154 | 751-885 | 1048-1197 | 1551-1627 | 1938-3197 | 3284-3352 | 3520-3606 | 3704-3751 | 3891-3944 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
ProfileScanPS50110RESPONSE_REGULATORY 1 91 21.212IPR001789Signal transduction response regulator, receiver region
HMMTigrTIGR01557myb_SHAQKYF: myb-lik 123 178 8.2e-17IPR006447Myb-like DNA-binding region, SHAQKYF class
HMMPfamPF00072Response_reg 2 88 7.6e-09IPR001789Signal transduction response regulator, receiver region
HMMPantherPTHR23283SENSOR HISTIDINE KIN 2 91 6.7e-08Not foundNot found
HMMPantherPTHR23283:SF31SENSOR HISTIDINE KIN 2 91 6.7e-08Not foundNot found
superfamilySSF46689Homeodomain-like 119 182 1e-13IPR009057Homeodomain-like
superfamilySSF52172CheY-like 2 92 2.5e-15IPR011006CheY-like
Segsegseg 512 533 NANot foundNot found
Gene3DG3DSA:1.10.10.60no description 119 182 4.5e-16IPR012287Homeodomain-related
Gene3DG3DSA:3.40.50.2300no description 1 93 6.2e-11Not foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0000156 Molecular Function two-component response regulator activity
GO:0000160 Biological Process two-component signal transduction system (phosphorelay)
GO:0003677 Molecular Function DNA binding
GO:0006355 Biological Process regulation of transcription, DNA-dependent
GO:0045449 Biological Process regulation of transcription
Swiss-Prot
Best HitE_value Description
Q9LYP56e-40ARR21_ARATH Putative two-component response regulator ARR21 OS=Arabidopsis thaliana GN=ARR21 PE=2 SV=2
TrEMBL
Best HitE_value Description
Q9FIS72e-33Q9FIS7_ARATH Genomic DNA, chromosome 5, P1 clone:MTG10 OS=Arabidopsis thaliana PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL23936(2 genes,1 taxa):Brassica oleraceaBol007823
ORTHOMCL23936(2 genes,1 taxa):Brassica oleraceaBol024821
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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