Basic Information
Gene Model:Bol024780
Gene Family:Not classificated
Chromosome:Cun
Scaffold:Scaffold000091
Sequence:
 | 
Gene Structure
Nucleotide Length:3157 bp
Transcript Length:1674 bp
Protein Length:557 aa
Strand:+
Location:Scaffold000091: 776846 : 780002
Gene CDSs(15): 1-92 | 380-459 | 564-667 | 767-834 | 941-1112 | 1254-1337 | 1432-1536 | 1606-1719 | 1804-1935 | 2016-2105 | 2200-2289 | 2368-2580 | 2661-2771 | 2854-2933 | 3019-3157 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
superfamilySSF53720ALDH-like 17 544 6.2e-50IPR016161Aldehyde/histidinol dehydrogenase
PatternScanPS00867CPSASE_2 271 278 NAIPR005479Carbamoyl phosphate synthetase, large subunit, ATP-binding
PatternScanPS00070ALDEHYDE_DEHYDR_CYS 330 341 NAIPR016160Aldehyde dehydrogenase, conserved site
HMMPfamPF00171Aldedh 62 524 1.6e-11IPR015590Aldehyde dehydrogenase
HMMPantherPTHR11699ALDEHYDE DEHYDROGENA 96 551 0IPR015590Aldehyde dehydrogenase
HMMPantherPTHR11699:SF8ALDEHYDE DEHYDROGENA 96 551 0Not foundNot found
Gene3DG3DSA:3.40.605.10no description 35 339 3.8e-31IPR016162Aldehyde dehydrogenase, N-terminal
Segsegseg 20 30 NANot foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0003824 Molecular Function catalytic activity
GO:0005524 Molecular Function ATP binding
GO:0008152 Biological Process metabolic process
GO:0016491 Molecular Function oxidoreductase activity
GO:0055114 Biological Process oxidation-reduction process
Swiss-Prot
Best HitE_value Description
Q8VZC30.0AL121_ARATH Delta-1-pyrroline-5-carboxylate dehydrogenase 12A1, mitochondrial OS=Arabidopsis thaliana GN=ALDH12A1 PE=2 SV=1
TrEMBL
Best HitE_value Description
A7YVW10.0A7YVW1_ACTCH P5CDH1 OS=Actinidia chinensis GN=P5CDH1 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL8706(9 genes,8 taxa):Arabidopsis thalianaAT5G62530.1
ORTHOMCL8706(9 genes,8 taxa):Brassica oleraceaBol020694
ORTHOMCL8706(9 genes,8 taxa):Brassica oleraceaBol024780
ORTHOMCL8706(9 genes,8 taxa):Brassica rapaBra010097
ORTHOMCL8706(9 genes,8 taxa):Vitis viniferaGSVIVT01008047001
ORTHOMCL8706(9 genes,8 taxa):Oryza sativaOs05t0536400-01
ORTHOMCL8706(9 genes,8 taxa):Populus trichocarpaPOPTR_0015s07550.1
ORTHOMCL8706(9 genes,8 taxa):Sorghum bicolorSb09g026810.1
ORTHOMCL8706(9 genes,8 taxa):Carica papayaevm.TU.supercontig_17.196
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


logo