Basic Information
Gene Model:Bol024724
Gene Family:ARIADNE Gene Families
Chromosome:C02
Scaffold:Scaffold000092
Sequence:
 | 
Gene Structure
Nucleotide Length:1653 bp
Transcript Length:1653 bp
Protein Length:550 aa
Strand:-
Location:C02: 3222660 : 3224312
Gene CDSs(1): 1-1653 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF01485IBR 205 269 1.2e-21IPR002867Zinc finger, C6HC-type
HMMPantherPTHR11685:SF10ARI-LIKE RING ZINC F 93 545 2.7e-247Not foundNot found
HMMPantherPTHR11685ARIADNE RING ZINC FI 93 545 2.7e-247Not foundNot found
ProfileScanPS50089ZF_RING_2 136 182 10.055IPR001841Zinc finger, RING-type
PatternScanPS00518ZF_RING_1 318 327 NAIPR017907Zinc finger, RING-type, conserved site
HMMSmartSM00647no description 205 269 9.9e-21IPR002867Zinc finger, C6HC-type
HMMSmartSM00647no description 282 343 0.033IPR002867Zinc finger, C6HC-type
Segsegseg 2 12 NANot foundNot found
Segsegseg 22 37 NANot foundNot found
Segsegseg 529 547 NANot foundNot found
superfamilySSF57850RING/U-box 113 226 2.1e-12Not foundNot found
superfamilySSF57850RING/U-box 288 346 3.4e-17Not foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0005515 Molecular Function protein binding
GO:0008270 Molecular Function zinc ion binding
Swiss-Prot
Best HitE_value Description
Q84RR00.0ARI7_ARATH Probable E3 ubiquitin-protein ligase ARI7 OS=Arabidopsis thaliana GN=ARI7 PE=2 SV=1
TrEMBL
Best HitE_value Description
B9MY130.0B9MY13_POPTR Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_741450 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL241(38 genes,8 taxa):Arabidopsis thalianaAT1G05890.1
ORTHOMCL241(38 genes,8 taxa):Arabidopsis thalianaAT2G31510.1
ORTHOMCL241(38 genes,8 taxa):Arabidopsis thalianaAT2G31760.1
ORTHOMCL241(38 genes,8 taxa):Arabidopsis thalianaAT2G31770.1
ORTHOMCL241(38 genes,8 taxa):Arabidopsis thalianaAT2G31780.1
ORTHOMCL241(38 genes,8 taxa):Brassica oleraceaBol004534
ORTHOMCL241(38 genes,8 taxa):Brassica oleraceaBol004656
ORTHOMCL241(38 genes,8 taxa):Brassica oleraceaBol006452
ORTHOMCL241(38 genes,8 taxa):Brassica oleraceaBol006453
ORTHOMCL241(38 genes,8 taxa):Brassica oleraceaBol008223
ORTHOMCL241(38 genes,8 taxa):Brassica oleraceaBol009030
ORTHOMCL241(38 genes,8 taxa):Brassica oleraceaBol014128
ORTHOMCL241(38 genes,8 taxa):Brassica oleraceaBol023324
ORTHOMCL241(38 genes,8 taxa):Brassica oleraceaBol024724
ORTHOMCL241(38 genes,8 taxa):Brassica oleraceaBol041028
ORTHOMCL241(38 genes,8 taxa):Brassica oleraceaBol045042
ORTHOMCL241(38 genes,8 taxa):Brassica rapaBra005642
ORTHOMCL241(38 genes,8 taxa):Brassica rapaBra006112
ORTHOMCL241(38 genes,8 taxa):Brassica rapaBra015463
ORTHOMCL241(38 genes,8 taxa):Brassica rapaBra021726
ORTHOMCL241(38 genes,8 taxa):Brassica rapaBra021742
ORTHOMCL241(38 genes,8 taxa):Brassica rapaBra022479
ORTHOMCL241(38 genes,8 taxa):Brassica rapaBra022845
ORTHOMCL241(38 genes,8 taxa):Brassica rapaBra022865
ORTHOMCL241(38 genes,8 taxa):Brassica rapaBra023338
ORTHOMCL241(38 genes,8 taxa):Vitis viniferaGSVIVT01003757001
ORTHOMCL241(38 genes,8 taxa):Vitis viniferaGSVIVT01010742001
ORTHOMCL241(38 genes,8 taxa):Oryza sativaOs04t0492100-01
ORTHOMCL241(38 genes,8 taxa):Oryza sativaOs08t0540300-01
ORTHOMCL241(38 genes,8 taxa):Oryza sativaOs09t0513800-01
ORTHOMCL241(38 genes,8 taxa):Populus trichocarpaPOPTR_0007s02130.1
ORTHOMCL241(38 genes,8 taxa):Populus trichocarpaPOPTR_0008s07680.1
ORTHOMCL241(38 genes,8 taxa):Populus trichocarpaPOPTR_0010s18800.1
ORTHOMCL241(38 genes,8 taxa):Populus trichocarpaPOPTR_0017s06050.1
ORTHOMCL241(38 genes,8 taxa):Sorghum bicolorSb06g021080.1
ORTHOMCL241(38 genes,8 taxa):Sorghum bicolorSb07g025570.1
ORTHOMCL241(38 genes,8 taxa):Carica papayaevm.TU.supercontig_71.10
ORTHOMCL241(38 genes,8 taxa):Carica papayaevm.TU.supercontig_99.46
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC02:1017290..3301726 (+)A.thalianaChr5:730292..3821072 (+)286
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC02:2634085..3252702 (+)B.rapaA10:1680634..2370845 (-)54
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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