Basic Information
Gene Model:Bol024697
Gene Family:Not classificated
Chromosome:C02
Scaffold:Scaffold000092
Sequence:
 | 
Gene Structure
Nucleotide Length:1112 bp
Transcript Length:576 bp
Protein Length:191 aa
Strand:-
Location:C02: 3012671 : 3013782
Gene CDSs(6): 1-72 | 165-223 | 305-454 | 530-622 | 835-945 | 1022-1112 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMTigrTIGR01090apt: adenine phospho 17 184 1.2e-80IPR005764Adenine phosphoribosyl transferase
HMMPantherPTHR10210RIBOSE-PHOSPHATE PYR 128 161 2.3e-05Not foundNot found
HMMPantherPTHR10210:SF3RIBOSE-PHOSPHATE PYR 128 161 2.3e-05Not foundNot found
superfamilySSF53271PRTase-like 8 181 1.8e-56Not foundNot found
HAMAPMF_00004APT_MF_00004 15 184 32.208IPR005764Adenine phosphoribosyl transferase
Gene3DG3DSA:3.40.50.2020no description 8 190 2.8e-58Not foundNot found
HMMPfamPF00156Pribosyltran 38 162 8.9e-42IPR000836Phosphoribosyltransferase
Gene Ontology
GO TermGO TypeDescription
GO:0003999 Molecular Function adenine phosphoribosyltransferase activity
GO:0006168 Biological Process adenine salvage
GO:0009116 Biological Process nucleoside metabolic process
Swiss-Prot
Best HitE_value Description
Q425639e-82APT2_ARATH Adenine phosphoribosyltransferase 2 OS=Arabidopsis thaliana GN=APT2 PE=2 SV=1
TrEMBL
Best HitE_value Description
Q9LFP01e-102Q9LFP0_ARATH Adenine phosphoribosyltransferase-like protein OS=Arabidopsis thaliana GN=F2I11_50 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL2406(14 genes,8 taxa):Arabidopsis thalianaAT1G80050.1
ORTHOMCL2406(14 genes,8 taxa):Arabidopsis thalianaAT5G11160.1
ORTHOMCL2406(14 genes,8 taxa):Brassica oleraceaBol021434
ORTHOMCL2406(14 genes,8 taxa):Brassica oleraceaBol024697
ORTHOMCL2406(14 genes,8 taxa):Brassica rapaBra003547
ORTHOMCL2406(14 genes,8 taxa):Brassica rapaBra023310
ORTHOMCL2406(14 genes,8 taxa):Vitis viniferaGSVIVT01017349001
ORTHOMCL2406(14 genes,8 taxa):Oryza sativaOs02t0613900-01
ORTHOMCL2406(14 genes,8 taxa):Oryza sativaOs02t0613900-02
ORTHOMCL2406(14 genes,8 taxa):Populus trichocarpaPOPTR_0006s27200.1
ORTHOMCL2406(14 genes,8 taxa):Populus trichocarpaPOPTR_0018s01860.1
ORTHOMCL2406(14 genes,8 taxa):Sorghum bicolorSb04g025930.1
ORTHOMCL2406(14 genes,8 taxa):Sorghum bicolorSb06g021810.1
ORTHOMCL2406(14 genes,8 taxa):Carica papayaevm.TU.supercontig_217.12
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC02:1017290..3301726 (+)A.thalianaChr5:730292..3821072 (+)286
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC02:2634085..3252702 (+)B.rapaA10:1680634..2370845 (-)54
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
RAT5G1116035505203552207Chr5Subgenome_I556
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


logo