Basic Information
Gene Model:Bol024664
Gene Family:Protein Kinase Gene Families
Chromosome:C02
Scaffold:Scaffold000092
Sequence:
 | 
Gene Structure
Nucleotide Length:1968 bp
Transcript Length:1968 bp
Protein Length:655 aa
Strand:-
Location:C02: 2843404 : 2845371
Gene CDSs(1): 1-1968 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMSmartSM00219no description 337 609 2.3e-36IPR020635Tyrosine-protein kinase, subgroup, catalytic domain
HMMSmartSM00220no description 337 609 8.9e-43IPR002290Serine/threonine-protein kinase domain
Gene3DG3DSA:1.10.510.10no description 416 610 2.9e-48Not foundNot found
Gene3DG3DSA:3.30.200.20no description 318 413 5.5e-26Not foundNot found
Gene3DG3DSA:2.60.120.200no description 17 269 2.3e-55IPR013320Concanavalin A-like lectin/glucanase, subgroup
Coilcoilcoiled-coil 299 320 NANot foundNot found
ProfileScanPS50011PROTEIN_KINASE_DOM 337 618 38.294IPR000719Protein kinase, catalytic domain
HMMPantherPTHR23258SERINE-THREONINE PRO 108 632 2e-175Not foundNot found
HMMPantherPTHR23258:SF438RECEPTOR LECTIN KINA 108 632 2e-175Not foundNot found
HMMPfamPF00069Pkinase 337 534 2.6e-54IPR017442Serine/threonine-protein kinase-like domain
HMMPfamPF00139Lectin_legB 18 251 4.9e-80IPR001220Legume lectin, beta chain
Segsegseg 278 293 NANot foundNot found
Segsegseg 624 651 NANot foundNot found
Segsegseg 161 179 NANot foundNot found
PatternScanPS00108PROTEIN_KINASE_ST 457 469 NAIPR008271Serine/threonine-protein kinase, active site
PatternScanPS00107PROTEIN_KINASE_ATP 343 366 NAIPR017441Protein kinase, ATP binding site
superfamilySSF56112Protein kinase-like 307 617 7.9e-82IPR011009Protein kinase-like domain
superfamilySSF49899Concanavalin A-like 17 255 4e-61IPR008985Concanavalin A-like lectin/glucanase
Gene Ontology
GO TermGO TypeDescription
GO:0004672 Molecular Function protein kinase activity
GO:0004674 Molecular Function protein serine/threonine kinase activity
GO:0005488 Molecular Function binding
GO:0005524 Molecular Function ATP binding
GO:0006468 Biological Process protein phosphorylation
Swiss-Prot
Best HitE_value Description
Q66GN22e-85LRKA3_ARATH Lectin-domain containing receptor kinase A4.3 OS=Arabidopsis thaliana GN=LECRKA4.3 PE=2 SV=1
TrEMBL
Best HitE_value Description
Q9LXA50.0Q9LXA5_ARATH Lectin-like protein kinase-like OS=Arabidopsis thaliana GN=F12B17_120 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL258(37 genes,8 taxa):Arabidopsis thalianaAT5G10530.1
ORTHOMCL258(37 genes,8 taxa):Arabidopsis thalianaAT5G65600.1
ORTHOMCL258(37 genes,8 taxa):Brassica oleraceaBol017219
ORTHOMCL258(37 genes,8 taxa):Brassica oleraceaBol024664
ORTHOMCL258(37 genes,8 taxa):Brassica oleraceaBol035903
ORTHOMCL258(37 genes,8 taxa):Brassica rapaBra006066
ORTHOMCL258(37 genes,8 taxa):Brassica rapaBra018308
ORTHOMCL258(37 genes,8 taxa):Brassica rapaBra024400
ORTHOMCL258(37 genes,8 taxa):Brassica rapaBra028580
ORTHOMCL258(37 genes,8 taxa):Vitis viniferaGSVIVT01001702001
ORTHOMCL258(37 genes,8 taxa):Oryza sativaOs01t0779300-01
ORTHOMCL258(37 genes,8 taxa):Oryza sativaOs07t0569550-00
ORTHOMCL258(37 genes,8 taxa):Oryza sativaOs08t0123900-00
ORTHOMCL258(37 genes,8 taxa):Oryza sativaOs08t0124000-01
ORTHOMCL258(37 genes,8 taxa):Oryza sativaOs08t0124000-02
ORTHOMCL258(37 genes,8 taxa):Oryza sativaOs08t0124100-01
ORTHOMCL258(37 genes,8 taxa):Oryza sativaOs08t0124500-01
ORTHOMCL258(37 genes,8 taxa):Oryza sativaOs08t0124700-01
ORTHOMCL258(37 genes,8 taxa):Oryza sativaOs08t0124900-00
ORTHOMCL258(37 genes,8 taxa):Oryza sativaOs08t0125132-00
ORTHOMCL258(37 genes,8 taxa):Oryza sativaOs08t0125200-01
ORTHOMCL258(37 genes,8 taxa):Oryza sativaOs08t0125800-01
ORTHOMCL258(37 genes,8 taxa):Populus trichocarpaPOPTR_0001s29000.1
ORTHOMCL258(37 genes,8 taxa):Populus trichocarpaPOPTR_0001s29050.1
ORTHOMCL258(37 genes,8 taxa):Populus trichocarpaPOPTR_0001s29080.1
ORTHOMCL258(37 genes,8 taxa):Populus trichocarpaPOPTR_0001s29080.2
ORTHOMCL258(37 genes,8 taxa):Populus trichocarpaPOPTR_0001s29090.1
ORTHOMCL258(37 genes,8 taxa):Populus trichocarpaPOPTR_0003s09340.1
ORTHOMCL258(37 genes,8 taxa):Populus trichocarpaPOPTR_0007s14980.1
ORTHOMCL258(37 genes,8 taxa):Populus trichocarpaPOPTR_0007s14990.1
ORTHOMCL258(37 genes,8 taxa):Populus trichocarpaPOPTR_0007s15000.1
ORTHOMCL258(37 genes,8 taxa):Populus trichocarpaPOPTR_0007s15010.1
ORTHOMCL258(37 genes,8 taxa):Sorghum bicolorSb01g006670.1
ORTHOMCL258(37 genes,8 taxa):Sorghum bicolorSb03g036370.1
ORTHOMCL258(37 genes,8 taxa):Carica papayaevm.TU.supercontig_129.10
ORTHOMCL258(37 genes,8 taxa):Carica papayaevm.TU.supercontig_129.11
ORTHOMCL258(37 genes,8 taxa):Carica papayaevm.TU.supercontig_129.9
Tandem Duplication
ClusterGene Num.Gene List
Cluster_5762Bol024663 Bol024664 
Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC02:1017290..3301726 (+)A.thalianaChr5:730292..3821072 (+)286
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC02:2634085..3252702 (+)B.rapaA10:1680634..2370845 (-)54
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
RAT5G1053033249783326933Chr5Subgenome_I556
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


logo