Basic Information
Gene Model:Bol024659
Gene Family:14-3-3 Gene Family
Chromosome:C02
Scaffold:Scaffold000092
Sequence:
 | 
Gene Structure
Nucleotide Length:1151 bp
Transcript Length:747 bp
Protein Length:248 aa
Strand:-
Location:C02: 2822343 : 2823493
Gene CDSs(4): 1-21 | 176-292 | 430-552 | 666-1151 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Gene3DG3DSA:1.20.190.20no description 5 248 2.6e-102IPR00030814-3-3 protein
Segsegseg 157 170 NANot foundNot found
PatternScanPS007961433_1 48 58 NAIPR00030814-3-3 protein
PatternScanPS007971433_2 220 239 NAIPR00030814-3-3 protein
HMMPantherPTHR1886014-3-3 2 248 1.1e-182IPR00030814-3-3 protein
superfamilySSF4844514-3-3 protein 4 240 2.1e-101IPR00030814-3-3 protein
HMMPIRPIRSF00086814-3-3 protein 5 248 1e-162IPR00030814-3-3 protein
HMMPfamPF0024414-3-3 7 245 8.8e-141IPR00030814-3-3 protein
Coilcoilcoiled-coil 198 219 NANot foundNot found
Coilcoilcoiled-coil 13 34 NANot foundNot found
HMMSmartSM00101no description 7 247 1.4e-180IPR00030814-3-3 protein
Gene Ontology
GO TermGO TypeDescription
GO:0019904 Molecular Function protein domain specific binding
Swiss-Prot
Best HitE_value Description
P483491e-13514336_ARATH 14-3-3-like protein GF14 lambda OS=Arabidopsis thaliana GN=GRF6 PE=1 SV=1
TrEMBL
Best HitE_value Description
C0KJL11e-130C0KJL1_BRANA 1433-4 OS=Brassica napus PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL25763(2 genes,2 taxa):Brassica oleraceaBol024659
ORTHOMCL25763(2 genes,2 taxa):Brassica rapaBra028586
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC02:1017290..3301726 (+)A.thalianaChr5:730292..3821072 (+)286
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC02:2634085..3252702 (+)B.rapaA10:1680634..2370845 (-)54
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
RAT5G1045032838533286347Chr5Subgenome_I556
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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