Basic Information
Gene Model:Bol024595
Gene Family:ARIADNE Gene Families
Chromosome:C02
Scaffold:Scaffold000092
Sequence:
 | 
Gene Structure
Nucleotide Length:1449 bp
Transcript Length:1449 bp
Protein Length:482 aa
Strand:-
Location:C02: 2474598 : 2476046
Gene CDSs(1): 1-1449 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF01485IBR 144 209 5.4e-07IPR002867Zinc finger, C6HC-type
HMMSmartSM00647no description 144 209 4.8e-13IPR002867Zinc finger, C6HC-type
HMMPantherPTHR11685:SF9ARI-LIKE RING ZINC F 46 446 5.2e-127Not foundNot found
HMMPantherPTHR11685ARIADNE RING ZINC FI 46 446 5.2e-127Not foundNot found
Segsegseg 454 474 NANot foundNot found
Segsegseg 364 376 NANot foundNot found
PatternScanPS01358ZF_RANBP2_1 420 439 NAIPR001876Zinc finger, RanBP2-type
Gene Ontology
GO TermGO TypeDescription
GO:0005622 Cellular Component intracellular
GO:0008270 Molecular Function zinc ion binding
Swiss-Prot
Best HitE_value Description
Q9C5A41e-114ARI16_ARATH Probable E3 ubiquitin-protein ligase ARI16 OS=Arabidopsis thaliana GN=ARI16 PE=2 SV=1
TrEMBL
Best HitE_value Description
B9GP092e-43B9GP09_POPTR Predicted protein (Fragment) OS=Populus trichocarpa GN=POPTRDRAFT_412783 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL25749(2 genes,2 taxa):Brassica oleraceaBol024595
ORTHOMCL25749(2 genes,2 taxa):Brassica rapaBra028646
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC02:1017290..3301726 (+)A.thalianaChr5:730292..3821072 (+)286
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC02:1725431..2631416 (+)B.rapaA10:2414874..3693243 (+)71
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
RAT5G0873028458242847415Chr5Subgenome_I556
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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