Basic Information
Gene Model:Bol024553
Gene Family:Not classificated
Chromosome:C02
Scaffold:Scaffold000092
Sequence:
 | 
Gene Structure
Nucleotide Length:6024 bp
Transcript Length:2979 bp
Protein Length:992 aa
Strand:+
Location:C02: 2282600 : 2288623
Gene CDSs(27): 1-148 | 209-448 | 1051-1106 | 1208-1294 | 1547-1681 | 1770-1889 | 1971-2105 | 2173-2249 | 2350-2425 | 2503-2577 | 2660-2764 | 2892-3061 | 3165-3267 | 3354-3466 | 3552-3753 | 3871-4002 | 4081-4195 | 4280-4365 | 4443-4538 | 4615-4751 | 4837-4939 | 5008-5087 | 5165-5243 | 5337-5394 | 5590-5687 | 5786-5880 | 5967-6024 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPantherPTHR19306STRUCTURAL MAINTENAN 2 990 0Not foundNot found
HMMPantherPTHR19306:SF2STRUCTURAL MAINTENAN 2 990 0Not foundNot found
BlastProDomPD936484Q806D4_9VIRU_Q806D4; 192 821 7e-10Not foundNot found
Coilcoilcoiled-coil 742 763 NANot foundNot found
Coilcoilcoiled-coil 794 822 NANot foundNot found
Coilcoilcoiled-coil 650 734 NANot foundNot found
Coilcoilcoiled-coil 568 645 NANot foundNot found
Coilcoilcoiled-coil 303 338 NANot foundNot found
Coilcoilcoiled-coil 281 302 NANot foundNot found
Coilcoilcoiled-coil 253 274 NANot foundNot found
Coilcoilcoiled-coil 218 246 NANot foundNot found
Coilcoilcoiled-coil 190 211 NANot foundNot found
superfamilySSF52540P-loop containing nu 19 982 1.2e-32Not foundNot found
Segsegseg 555 567 NANot foundNot found
Segsegseg 173 185 NANot foundNot found
Segsegseg 320 339 NANot foundNot found
HMMPfamPF02463SMC_N 18 984 4.3e-11IPR003395RecF/RecN/SMC protein, N-terminal
Gene3DG3DSA:3.40.50.300no description 902 982 2.8e-07Not foundNot found
Gene3DG3DSA:3.40.50.300no description 19 173 3.1e-22Not foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0005524 Molecular Function ATP binding
GO:0005694 Cellular Component chromosome
Swiss-Prot
Best HitE_value Description
Q96SB81e-86SMC6_HUMAN Structural maintenance of chromosomes protein 6 OS=Homo sapiens GN=SMC6 PE=1 SV=2
TrEMBL
Best HitE_value Description
Q9FLR50.0Q9FLR5_ARATH SMC-like protein OS=Arabidopsis thaliana GN=At5g07660 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL1846(16 genes,8 taxa):Arabidopsis thalianaAT5G07660.1
ORTHOMCL1846(16 genes,8 taxa):Arabidopsis thalianaAT5G61460.1
ORTHOMCL1846(16 genes,8 taxa):Brassica oleraceaBol017011
ORTHOMCL1846(16 genes,8 taxa):Brassica oleraceaBol024553
ORTHOMCL1846(16 genes,8 taxa):Brassica rapaBra012956
ORTHOMCL1846(16 genes,8 taxa):Brassica rapaBra028687
ORTHOMCL1846(16 genes,8 taxa):Vitis viniferaGSVIVT01013865001
ORTHOMCL1846(16 genes,8 taxa):Oryza sativaOs09t0121000-01
ORTHOMCL1846(16 genes,8 taxa):Oryza sativaOs09t0121050-00
ORTHOMCL1846(16 genes,8 taxa):Populus trichocarpaPOPTR_0003s10690.1
ORTHOMCL1846(16 genes,8 taxa):Populus trichocarpaPOPTR_0003s10700.1
ORTHOMCL1846(16 genes,8 taxa):Populus trichocarpaPOPTR_0003s10710.1
ORTHOMCL1846(16 genes,8 taxa):Sorghum bicolorSb02g019360.1
ORTHOMCL1846(16 genes,8 taxa):Carica papayaevm.TU.supercontig_121.1
ORTHOMCL1846(16 genes,8 taxa):Carica papayaevm.TU.supercontig_121.5
ORTHOMCL1846(16 genes,8 taxa):Carica papayaevm.TU.supercontig_1936.1
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC02:1017290..3301726 (+)A.thalianaChr5:730292..3821072 (+)286
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC02:2097545..2296157 (+)B.rapaA10:3011688..3326038 (-)15
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
RAT5G0766024228392429912Chr5Subgenome_I556
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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