Basic Information
Gene Model:Bol024533
Gene Family:Transcription Factor Families
Chromosome:C02
Scaffold:Scaffold000092
Sequence:
 | 
Gene Structure
Nucleotide Length:3596 bp
Transcript Length:2367 bp
Protein Length:788 aa
Strand:+
Location:C02: 2146460 : 2150055
Gene CDSs(8): 1-187 | 436-891 | 1013-1089 | 1444-2781 | 2865-2984 | 3222-3308 | 3399-3443 | 3540-3596 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Gene3DG3DSA:1.10.10.60no description 187 250 1.1e-20IPR012287Homeodomain-related
Gene3DG3DSA:3.40.50.2300no description 6 104 9.6e-11Not foundNot found
ProfileScanPS50110RESPONSE_REGULATORY 1 100 16.170IPR001789Signal transduction response regulator, receiver region
HMMTigrTIGR01557myb_SHAQKYF: myb-lik 191 246 5.5e-32IPR006447Myb-like DNA-binding region, SHAQKYF class
superfamilySSF52172CheY-like 7 104 1.4e-15IPR011006CheY-like
superfamilySSF46689Homeodomain-like 187 250 2.5e-17IPR009057Homeodomain-like
HMMPantherPTHR23283SENSOR HISTIDINE KIN 6 105 8.3e-06Not foundNot found
HMMPantherPTHR23283:SF49TWO-COMPONENT SENSOR 6 105 8.3e-06Not foundNot found
HMMPfamPF00072Response_reg 13 97 1.1e-11IPR001789Signal transduction response regulator, receiver region
HMMPfamPF00249Myb_DNA-binding 193 243 3.3e-07IPR014778Myb, DNA-binding
HMMSmartSM00448no description 1 96 0.0089IPR001789Signal transduction response regulator, receiver region
Segsegseg 766 777 NANot foundNot found
Segsegseg 184 197 NANot foundNot found
Segsegseg 140 159 NANot foundNot found
BlastProDomPD910989YBI1_YEAST_P38180; 223 567 2e-05Not foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0000156 Molecular Function two-component response regulator activity
GO:0000160 Biological Process two-component signal transduction system (phosphorelay)
GO:0003677 Molecular Function DNA binding
GO:0006355 Biological Process regulation of transcription, DNA-dependent
GO:0045449 Biological Process regulation of transcription
Swiss-Prot
Best HitE_value Description
Q9LYP51e-140ARR21_ARATH Putative two-component response regulator ARR21 OS=Arabidopsis thaliana GN=ARR21 PE=2 SV=2
TrEMBL
Best HitE_value Description
B9ID117e-45B9ID11_POPTR Type-b response regulator OS=Populus trichocarpa GN=PtRR20 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL2981(13 genes,6 taxa):Arabidopsis thalianaAT2G27070.1
ORTHOMCL2981(13 genes,6 taxa):Arabidopsis thalianaAT5G07210.1
ORTHOMCL2981(13 genes,6 taxa):Brassica oleraceaBol008869
ORTHOMCL2981(13 genes,6 taxa):Brassica oleraceaBol024533
ORTHOMCL2981(13 genes,6 taxa):Brassica rapaBra005928
ORTHOMCL2981(13 genes,6 taxa):Brassica rapaBra009284
ORTHOMCL2981(13 genes,6 taxa):Brassica rapaBra028705
ORTHOMCL2981(13 genes,6 taxa):Vitis viniferaGSVIVT01010626001
ORTHOMCL2981(13 genes,6 taxa):Vitis viniferaGSVIVT01010627001
ORTHOMCL2981(13 genes,6 taxa):Populus trichocarpaPOPTR_0012s13900.1
ORTHOMCL2981(13 genes,6 taxa):Populus trichocarpaPOPTR_0012s13900.2
ORTHOMCL2981(13 genes,6 taxa):Populus trichocarpaPOPTR_0015s13860.1
ORTHOMCL2981(13 genes,6 taxa):Carica papayaevm.TU.supercontig_107.3
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC02:1017290..3301726 (+)A.thalianaChr5:730292..3821072 (+)286
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC02:2097545..2296157 (+)B.rapaA10:3011688..3326038 (-)15
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
RAT5G0721022522372256018Chr5Subgenome_I556
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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