Basic Information
Gene Model:Bol024519
Gene Family:Not classificated
Chromosome:C02
Scaffold:Scaffold000092
Sequence:
 | 
Gene Structure
Nucleotide Length:1871 bp
Transcript Length:1155 bp
Protein Length:384 aa
Strand:-
Location:C02: 2067592 : 2069462
Gene CDSs(2): 1-857 | 1574-1871 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF00481PP2C 74 322 1.7e-30IPR014045Protein phosphatase 2C, N-terminal
Segsegseg 17 34 NANot foundNot found
superfamilySSF81606Protein serine/threo 24 351 5.7e-56IPR001932Protein phosphatase 2C-related
PatternScanPS01032PP2C 74 82 NAIPR000222Protein phosphatase 2C, manganese/magnesium aspartate binding site
HMMSmartSM00332no description 38 348 4.7e-67IPR001932Protein phosphatase 2C-related
Gene3DG3DSA:3.60.40.10no description 43 354 7.4e-55IPR001932Protein phosphatase 2C-related
HMMPantherPTHR13832PROTEIN PHOSPHATASE 37 371 7.9e-157IPR015655Protein phosphatase 2C
HMMPantherPTHR13832:SF97PROTEIN PHOSPHATASE- 37 371 7.9e-157Not foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0003824 Molecular Function catalytic activity
GO:0004722 Molecular Function protein serine/threonine phosphatase activity
GO:0006470 Biological Process protein dephosphorylation
GO:0008287 Cellular Component protein serine/threonine phosphatase complex
Swiss-Prot
Best HitE_value Description
Q84JD50.0P2C68_ARATH Probable protein phosphatase 2C 68 OS=Arabidopsis thaliana GN=At5g06750 PE=2 SV=1
TrEMBL
Best HitE_value Description
B9IHY71e-163B9IHY7_POPTR Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_576256 PE=3 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL8371(9 genes,8 taxa):Arabidopsis thalianaAT5G06750.1
ORTHOMCL8371(9 genes,8 taxa):Brassica oleraceaBol024519
ORTHOMCL8371(9 genes,8 taxa):Brassica rapaBra028720
ORTHOMCL8371(9 genes,8 taxa):Vitis viniferaGSVIVT01033496001
ORTHOMCL8371(9 genes,8 taxa):Oryza sativaOs02t0685600-01
ORTHOMCL8371(9 genes,8 taxa):Populus trichocarpaPOPTR_0006s20700.1
ORTHOMCL8371(9 genes,8 taxa):Populus trichocarpaPOPTR_0016s04480.1
ORTHOMCL8371(9 genes,8 taxa):Sorghum bicolorSb04g031580.2
ORTHOMCL8371(9 genes,8 taxa):Carica papayaevm.TU.supercontig_85.65
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC02:1017290..3301726 (+)A.thalianaChr5:730292..3821072 (+)286
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC02:1725431..2631416 (+)B.rapaA10:2414874..3693243 (+)71
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
RAT5G0675020862662088997Chr5Subgenome_I556
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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