Basic Information
Gene Model:Bol024510
Gene Family:Not classificated
Chromosome:C02
Scaffold:Scaffold000092
Sequence:
 | 
Gene Structure
Nucleotide Length:6688 bp
Transcript Length:2157 bp
Protein Length:718 aa
Strand:-
Location:C02: 2014404 : 2021091
Gene CDSs(10): 1-216 | 301-408 | 481-765 | 1435-1725 | 1806-2114 | 2355-2538 | 2624-2779 | 2868-3103 | 3678-3742 | 6382-6688 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Segsegseg 605 621 NANot foundNot found
Segsegseg 61 84 NANot foundNot found
Segsegseg 165 178 NANot foundNot found
Segsegseg 567 581 NANot foundNot found
Segsegseg 9 20 NANot foundNot found
ProfileScanPS50893ABC_TRANSPORTER_2 123 369 22.429IPR003439ABC transporter-like
HMMPfamPF01061ABC2_membrane 465 674 1.3e-52IPR013525ABC-2 type transporter
HMMPfamPF00005ABC_tran 156 345 2e-45IPR003439ABC transporter-like
superfamilySSF52540P-loop containing nu 123 358 8.2e-52Not foundNot found
HMMSmartSM00382no description 155 346 3.7e-13IPR003593ATPase, AAA+ type, core
HMMPantherPTHR19241ATP-BINDING CASSETTE 87 717 0Not foundNot found
HMMPantherPTHR19241:SF23ATP-BINDING CASSETTE 87 717 0Not foundNot found
PatternScanPS00211ABC_TRANSPORTER_1 269 283 NAIPR017871ABC transporter, conserved site
Gene3DG3DSA:3.40.50.300no description 93 359 7.4e-43Not foundNot found
PatternScanPS00012PHOSPHOPANTETHEINE 296 311 NAIPR006162Phosphopantetheine attachment site
Gene Ontology
GO TermGO TypeDescription
GO:0000166 Molecular Function nucleotide binding
GO:0005524 Molecular Function ATP binding
GO:0016020 Cellular Component membrane
GO:0016887 Molecular Function ATPase activity
GO:0017111 Molecular Function nucleoside-triphosphatase activity
GO:0031177 Molecular Function phosphopantetheine binding
Swiss-Prot
Best HitE_value Description
Q93YS40.0AB22G_ARATH ABC transporter G family member 22 OS=Arabidopsis thaliana GN=ABCG22 PE=1 SV=1
TrEMBL
Best HitE_value Description
B9DH730.0B9DH73_ARATH AT5G06530 protein OS=Arabidopsis thaliana GN=AT5G06530 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL1193(19 genes,8 taxa):Arabidopsis thalianaAT3G52310.1
ORTHOMCL1193(19 genes,8 taxa):Arabidopsis thalianaAT3G52340.1
ORTHOMCL1193(19 genes,8 taxa):Arabidopsis thalianaAT5G06530.2
ORTHOMCL1193(19 genes,8 taxa):Brassica oleraceaBol009133
ORTHOMCL1193(19 genes,8 taxa):Brassica oleraceaBol009134
ORTHOMCL1193(19 genes,8 taxa):Brassica oleraceaBol024510
ORTHOMCL1193(19 genes,8 taxa):Brassica rapaBra009203
ORTHOMCL1193(19 genes,8 taxa):Brassica rapaBra028729
ORTHOMCL1193(19 genes,8 taxa):Brassica rapaBra033441
ORTHOMCL1193(19 genes,8 taxa):Vitis viniferaGSVIVT01001660001
ORTHOMCL1193(19 genes,8 taxa):Vitis viniferaGSVIVT01022526001
ORTHOMCL1193(19 genes,8 taxa):Oryza sativaOs03t0157400-01
ORTHOMCL1193(19 genes,8 taxa):Oryza sativaOs03t0157400-02
ORTHOMCL1193(19 genes,8 taxa):Populus trichocarpaPOPTR_0006s21400.1
ORTHOMCL1193(19 genes,8 taxa):Populus trichocarpaPOPTR_0006s21400.2
ORTHOMCL1193(19 genes,8 taxa):Populus trichocarpaPOPTR_0016s06620.1
ORTHOMCL1193(19 genes,8 taxa):Populus trichocarpaPOPTR_0016s06620.2
ORTHOMCL1193(19 genes,8 taxa):Sorghum bicolorSb01g046620.1
ORTHOMCL1193(19 genes,8 taxa):Carica papayaevm.TU.supercontig_222.17
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC02:1017290..3301726 (+)A.thalianaChr5:730292..3821072 (+)286
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC02:1725431..2631416 (+)B.rapaA10:2414874..3693243 (+)71
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
RAT5G0653019897471994824Chr5Subgenome_I556
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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