Basic Information
Gene Model:Bol024446
Gene Family:Not classificated
Chromosome:C02
Scaffold:Scaffold000092
Sequence:
 | 
Gene Structure
Nucleotide Length:4929 bp
Transcript Length:2484 bp
Protein Length:827 aa
Strand:-
Location:C02: 1633078 : 1638006
Gene CDSs(19): 1-453 | 534-813 | 933-997 | 1089-1148 | 1227-1445 | 1696-1780 | 1917-2086 | 2264-2377 | 2448-2547 | 2887-2952 | 3073-3136 | 3223-3296 | 3438-3727 | 3809-3858 | 4087-4156 | 4250-4321 | 4413-4487 | 4641-4709 | 4822-4929 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF06602Myotub-related 228 350 5.3e-66IPR010569Myotubularin-related
superfamilySSF50729PH domain-like 46 174 9.5e-18Not foundNot found
superfamilySSF52799(Phosphotyrosine pro 204 653 2.4e-117Not foundNot found
Segsegseg 761 772 NANot foundNot found
Segsegseg 706 721 NANot foundNot found
Segsegseg 5 18 NANot foundNot found
Segsegseg 504 514 NANot foundNot found
Segsegseg 630 642 NANot foundNot found
Coilcoilcoiled-coil 679 718 NANot foundNot found
HMMSmartSM00568no description 42 109 4.9e-06IPR004182GRAM
HMMPantherPTHR10807MYOTUBULARIN 55 689 0Not foundNot found
HMMPantherPTHR10807:SF8MYOTUBULARIN-RELATED 55 689 0Not foundNot found
ProfileScanPS51339PPASE_MYOTUBULARIN 196 647 107.820IPR017906Myotubularin phosphatase
PatternScanPS00383TYR_PHOSPHATASE_1 438 448 NAIPR016130Protein-tyrosine phosphatase, active site
Gene Ontology
GO TermGO TypeDescription
GO:0004725 Molecular Function protein tyrosine phosphatase activity
GO:0016311 Biological Process dephosphorylation
GO:0016791 Molecular Function phosphatase activity
Swiss-Prot
Best HitE_value Description
A6QLT26e-89MTMR2_BOVIN Myotubularin-related protein 2 OS=Bos taurus GN=MTMR2 PE=2 SV=1
TrEMBL
Best HitE_value Description
Q0WP530.0Q0WP53_ARATH Myotubularin-like protein OS=Arabidopsis thaliana GN=At5g04540 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL1777(16 genes,8 taxa):Arabidopsis thalianaAT3G10550.1
ORTHOMCL1777(16 genes,8 taxa):Arabidopsis thalianaAT5G04540.1
ORTHOMCL1777(16 genes,8 taxa):Brassica oleraceaBol002443
ORTHOMCL1777(16 genes,8 taxa):Brassica oleraceaBol023143
ORTHOMCL1777(16 genes,8 taxa):Brassica oleraceaBol024446
ORTHOMCL1777(16 genes,8 taxa):Brassica rapaBra009444
ORTHOMCL1777(16 genes,8 taxa):Brassica rapaBra028785
ORTHOMCL1777(16 genes,8 taxa):Brassica rapaBra034126
ORTHOMCL1777(16 genes,8 taxa):Vitis viniferaGSVIVT01034690001
ORTHOMCL1777(16 genes,8 taxa):Oryza sativaOs08t0556700-01
ORTHOMCL1777(16 genes,8 taxa):Populus trichocarpaPOPTR_0008s02720.1
ORTHOMCL1777(16 genes,8 taxa):Populus trichocarpaPOPTR_0010s23980.1
ORTHOMCL1777(16 genes,8 taxa):Sorghum bicolorSb07g024440.1
ORTHOMCL1777(16 genes,8 taxa):Sorghum bicolorSb07g024450.1
ORTHOMCL1777(16 genes,8 taxa):Carica papayaevm.TU.supercontig_128.53
ORTHOMCL1777(16 genes,8 taxa):Carica papayaevm.TU.supercontig_942.1
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC02:1017290..3301726 (+)A.thalianaChr5:730292..3821072 (+)286
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC02:1034730..1709877 (+)B.rapaA10:3696620..4392222 (-)45
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
RAT5G0454012964421302444Chr5Subgenome_I556
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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