Basic Information
Gene Model:Bol024387
Gene Family:Not classificated
Chromosome:C07
Scaffold:Scaffold000093_P2
Sequence:
 | 
Gene Structure
Nucleotide Length:2257 bp
Transcript Length:2175 bp
Protein Length:724 aa
Strand:-
Location:C07: 41347501 : 41349757
Gene CDSs(2): 1-1894 | 1977-2257 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF01150GDA1_CD39 122 568 9.6e-20IPR000407Nucleoside phosphatase GDA1/CD39
HMMPantherPTHR11782ADENOSINE/GUANOSINE 129 626 0IPR000407Nucleoside phosphatase GDA1/CD39
HMMPantherPTHR11782:SF3ADENOSINE DIPHOSPHAT 129 626 0Not foundNot found
Segsegseg 653 678 NANot foundNot found
Segsegseg 687 716 NANot foundNot found
Segsegseg 574 590 NANot foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0016787 Molecular Function hydrolase activity
Swiss-Prot
Best HitE_value Description
Q8K0L21e-32ENTP8_MOUSE Ectonucleoside triphosphate diphosphohydrolase 8 OS=Mus musculus GN=Entpd8 PE=1 SV=3
TrEMBL
Best HitE_value Description
O496760.0O49676_ARATH Putative uncharacterized protein AT4g19180 OS=Arabidopsis thaliana GN=T18B16.150 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL6488(10 genes,8 taxa):Arabidopsis thalianaAT4G19180.1
ORTHOMCL6488(10 genes,8 taxa):Brassica oleraceaBol009344
ORTHOMCL6488(10 genes,8 taxa):Brassica oleraceaBol024387
ORTHOMCL6488(10 genes,8 taxa):Brassica rapaBra012554
ORTHOMCL6488(10 genes,8 taxa):Brassica rapaBra013379
ORTHOMCL6488(10 genes,8 taxa):Vitis viniferaGSVIVT01032759001
ORTHOMCL6488(10 genes,8 taxa):Oryza sativaOs10t0350500-01
ORTHOMCL6488(10 genes,8 taxa):Populus trichocarpaPOPTR_0004s24490.1
ORTHOMCL6488(10 genes,8 taxa):Sorghum bicolorSb09g022850.1
ORTHOMCL6488(10 genes,8 taxa):Carica papayaevm.TU.supercontig_90.23
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC07:41033300..41643369 (-)A.thalianaChr5:18163132..18645966 (+)23
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC07:41033300..41953599 (+)B.rapaA08:10118463..10877695 (-)36
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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