Basic Information
Gene Model:Bol024308
Gene Family:Not classificated
Chromosome:C07
Scaffold:Scaffold000093_P2
Sequence:
 | 
Gene Structure
Nucleotide Length:1566 bp
Transcript Length:867 bp
Protein Length:288 aa
Strand:+
Location:C07: 41968221 : 41969786
Gene CDSs(5): 1-111 | 200-423 | 678-888 | 1157-1351 | 1441-1566 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Gene3DG3DSA:3.20.20.70no description 11 280 5.7e-69IPR013785Aldolase-type TIM barrel
HMMPantherPTHR10795SUBTILISIN/KEXIN-REL 6 110 2.7e-71IPR015500Peptidase S8, subtilisin-related
HMMPantherPTHR10795:SF3FURIN 6 110 2.7e-71Not foundNot found
superfamilySSF102110(2r)-phospho-3-sulfo 11 280 1.1e-77IPR003830(2R)-phospho-3-sulpholactate synthase, ComA
HMMPfamPF02679ComA 10 275 2.1e-146IPR003830(2R)-phospho-3-sulpholactate synthase, ComA
Gene Ontology
GO TermGO TypeDescription
GO:0003824 Molecular Function catalytic activity
GO:0008152 Biological Process metabolic process
GO:0019295 Biological Process coenzyme M biosynthetic process
Swiss-Prot
Best HitE_value Description
O277101e-09COMA_METTH Phosphosulfolactate synthase OS=Methanobacterium thermoautotrophicum GN=comA PE=3 SV=1
TrEMBL
Best HitE_value Description
Q8GWL11e-155Q8GWL1_ARATH Putative uncharacterized protein At4g21320/T6K22_50 OS=Arabidopsis thaliana GN=At4g21320/T6K22_50 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL11815(7 genes,7 taxa):Arabidopsis thalianaAT4G21320.1
ORTHOMCL11815(7 genes,7 taxa):Brassica oleraceaBol024308
ORTHOMCL11815(7 genes,7 taxa):Vitis viniferaGSVIVT01004352001
ORTHOMCL11815(7 genes,7 taxa):Oryza sativaOs06t0682900-01
ORTHOMCL11815(7 genes,7 taxa):Populus trichocarpaPOPTR_0011s03420.1
ORTHOMCL11815(7 genes,7 taxa):Sorghum bicolorSb10g027540.1
ORTHOMCL11815(7 genes,7 taxa):Carica papayaevm.TU.supercontig_81.5
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC07:41846824..43204549 (+)A.thalianaChr4:11133186..12170086 (+)87
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC07:41033300..46754330 (+)B.rapaA03:2678546..8921680 (-)626
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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