Basic Information
Gene Model:Bol024299
Gene Family:Not classificated
Chromosome:C07
Scaffold:Scaffold000093_P2
Sequence:
 | 
Gene Structure
Nucleotide Length:3498 bp
Transcript Length:2007 bp
Protein Length:668 aa
Strand:-
Location:C07: 42046736 : 42050233
Gene CDSs(7): 1-120 | 926-1286 | 1622-2013 | 2101-2363 | 2473-2587 | 2669-2861 | 2936-3498 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
superfamilySSF52743Subtilisin-like 28 523 9.5e-62IPR000209Peptidase S8/S53, subtilisin/kexin/sedolisin
HMMPantherPTHR10795SUBTILISIN/KEXIN-REL 62 665 6.7e-297IPR015500Peptidase S8, subtilisin-related
HMMPantherPTHR10795:SF17SUBTILISIN-LIKE PROT 62 665 6.7e-297Not foundNot found
HMMPfamPF02225PA 286 375 1.2e-11IPR003137Protease-associated PA
HMMPfamPF00082Peptidase_S8 201 510 2e-16IPR000209Peptidase S8/S53, subtilisin/kexin/sedolisin
Gene3DG3DSA:3.40.50.200no description 31 519 4.8e-59IPR000209Peptidase S8/S53, subtilisin/kexin/sedolisin
PatternScanPS00138SUBTILASE_SER 447 457 NAIPR000209Peptidase S8/S53, subtilisin/kexin/sedolisin
Segsegseg 41 49 NANot foundNot found
Segsegseg 136 147 NANot foundNot found
Segsegseg 387 398 NANot foundNot found
Segsegseg 10 22 NANot foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0004252 Molecular Function serine-type endopeptidase activity
GO:0006508 Biological Process proteolysis
Swiss-Prot
Best HitE_value Description
O653511e-111SUBL_ARATH Subtilisin-like protease OS=Arabidopsis thaliana GN=ARA12 PE=1 SV=1
TrEMBL
Best HitE_value Description
Q8GUK40.0Q8GUK4_ARATH Subtilisin proteinase-like OS=Arabidopsis thaliana GN=At4g21650 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL88(65 genes,8 taxa):Arabidopsis thalianaAT1G32940.1
ORTHOMCL88(65 genes,8 taxa):Arabidopsis thalianaAT1G32950.1
ORTHOMCL88(65 genes,8 taxa):Arabidopsis thalianaAT1G32960.1
ORTHOMCL88(65 genes,8 taxa):Arabidopsis thalianaAT1G32970.1
ORTHOMCL88(65 genes,8 taxa):Arabidopsis thalianaAT4G10510.1
ORTHOMCL88(65 genes,8 taxa):Arabidopsis thalianaAT4G10520.1
ORTHOMCL88(65 genes,8 taxa):Arabidopsis thalianaAT4G10530.1
ORTHOMCL88(65 genes,8 taxa):Arabidopsis thalianaAT4G10540.1
ORTHOMCL88(65 genes,8 taxa):Arabidopsis thalianaAT4G10550.1
ORTHOMCL88(65 genes,8 taxa):Arabidopsis thalianaAT4G21323.1
ORTHOMCL88(65 genes,8 taxa):Arabidopsis thalianaAT4G21630.1
ORTHOMCL88(65 genes,8 taxa):Arabidopsis thalianaAT4G21640.1
ORTHOMCL88(65 genes,8 taxa):Arabidopsis thalianaAT4G21650.1
ORTHOMCL88(65 genes,8 taxa):Arabidopsis thalianaAT5G11940.1
ORTHOMCL88(65 genes,8 taxa):Brassica oleraceaBol003579
ORTHOMCL88(65 genes,8 taxa):Brassica oleraceaBol022191
ORTHOMCL88(65 genes,8 taxa):Brassica oleraceaBol024298
ORTHOMCL88(65 genes,8 taxa):Brassica oleraceaBol024299
ORTHOMCL88(65 genes,8 taxa):Brassica oleraceaBol028435
ORTHOMCL88(65 genes,8 taxa):Brassica rapaBra004153
ORTHOMCL88(65 genes,8 taxa):Brassica rapaBra004154
ORTHOMCL88(65 genes,8 taxa):Brassica rapaBra013544
ORTHOMCL88(65 genes,8 taxa):Brassica rapaBra022966
ORTHOMCL88(65 genes,8 taxa):Brassica rapaBra023297
ORTHOMCL88(65 genes,8 taxa):Brassica rapaBra023300
ORTHOMCL88(65 genes,8 taxa):Brassica rapaBra023349
ORTHOMCL88(65 genes,8 taxa):Brassica rapaBra033170
ORTHOMCL88(65 genes,8 taxa):Brassica rapaBra037906
ORTHOMCL88(65 genes,8 taxa):Brassica rapaBra038766
ORTHOMCL88(65 genes,8 taxa):Brassica rapaBra038768
ORTHOMCL88(65 genes,8 taxa):Brassica rapaBra038777
ORTHOMCL88(65 genes,8 taxa):Brassica rapaBra038778
ORTHOMCL88(65 genes,8 taxa):Vitis viniferaGSVIVT01019686001
ORTHOMCL88(65 genes,8 taxa):Vitis viniferaGSVIVT01019687001
ORTHOMCL88(65 genes,8 taxa):Vitis viniferaGSVIVT01024195001
ORTHOMCL88(65 genes,8 taxa):Vitis viniferaGSVIVT01038620001
ORTHOMCL88(65 genes,8 taxa):Vitis viniferaGSVIVT01038641001
ORTHOMCL88(65 genes,8 taxa):Vitis viniferaGSVIVT01038642001
ORTHOMCL88(65 genes,8 taxa):Oryza sativaOs01t0794800-01
ORTHOMCL88(65 genes,8 taxa):Oryza sativaOs01t0795000-01
ORTHOMCL88(65 genes,8 taxa):Oryza sativaOs01t0795200-01
ORTHOMCL88(65 genes,8 taxa):Oryza sativaOs02t0269600-00
ORTHOMCL88(65 genes,8 taxa):Oryza sativaOs02t0270200-01
ORTHOMCL88(65 genes,8 taxa):Oryza sativaOs02t0270900-00
ORTHOMCL88(65 genes,8 taxa):Oryza sativaOs02t0271000-01
ORTHOMCL88(65 genes,8 taxa):Oryza sativaOs04t0121100-01
ORTHOMCL88(65 genes,8 taxa):Oryza sativaOs04t0121300-00
ORTHOMCL88(65 genes,8 taxa):Oryza sativaOs04t0127200-01
ORTHOMCL88(65 genes,8 taxa):Oryza sativaOs04t0127200-02
ORTHOMCL88(65 genes,8 taxa):Oryza sativaOs04t0127300-01
ORTHOMCL88(65 genes,8 taxa):Populus trichocarpaPOPTR_0001s45450.1
ORTHOMCL88(65 genes,8 taxa):Populus trichocarpaPOPTR_0001s45470.1
ORTHOMCL88(65 genes,8 taxa):Populus trichocarpaPOPTR_0001s45480.1
ORTHOMCL88(65 genes,8 taxa):Populus trichocarpaPOPTR_0001s45490.1
ORTHOMCL88(65 genes,8 taxa):Populus trichocarpaPOPTR_0004s16850.1
ORTHOMCL88(65 genes,8 taxa):Populus trichocarpaPOPTR_0009s12610.1
ORTHOMCL88(65 genes,8 taxa):Populus trichocarpaPOPTR_0011s15400.1
ORTHOMCL88(65 genes,8 taxa):Populus trichocarpaPOPTR_0011s15440.1
ORTHOMCL88(65 genes,8 taxa):Sorghum bicolorSb02g030760.1
ORTHOMCL88(65 genes,8 taxa):Sorghum bicolorSb03g037010.1
ORTHOMCL88(65 genes,8 taxa):Sorghum bicolorSb05g022600.1
ORTHOMCL88(65 genes,8 taxa):Sorghum bicolorSb05g022620.1
ORTHOMCL88(65 genes,8 taxa):Sorghum bicolorSb06g001140.1
ORTHOMCL88(65 genes,8 taxa):Carica papayaevm.TU.supercontig_1420.2
ORTHOMCL88(65 genes,8 taxa):Carica papayaevm.TU.supercontig_1497.1
Tandem Duplication
ClusterGene Num.Gene List
Cluster_6822Bol024298 Bol024299 
Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC07:41846824..43204549 (+)A.thalianaChr4:11133186..12170086 (+)87
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC07:42028683..43223846 (+)B.rapaA03:16624517..17239689 (-)18
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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