Basic Information
Gene Model:Bol024266
Gene Family:Amino Acid/Auxin Permease AAAP Family
Chromosome:Cun
Scaffold:Scaffold000093_P1
Sequence:
 | 
Gene Structure
Nucleotide Length:1710 bp
Transcript Length:1359 bp
Protein Length:452 aa
Strand:-
Location:Scaffold000093_P1: 311175 : 312884
Gene CDSs(5): 1-486 | 571-702 | 802-1217 | 1300-1433 | 1520-1710 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPantherPTHR22950AMINO ACID TRANSPORT 20 441 2.1e-63Not foundNot found
Segsegseg 363 372 NANot foundNot found
HMMPfamPF01490Aa_trans 32 433 8.9e-35IPR013057Amino acid transporter, transmembrane
Gene Ontology
GO TermGO TypeDescription

Note: this gene was not detected its best hit in Swiss-Prot database.

Swiss-Prot
Best HitE_value Description
Q84WE90.0LHTL7_ARATH Lysine histidine transporter-like 7 OS=Arabidopsis thaliana GN=At4g35180 PE=2 SV=1
TrEMBL
Best HitE_value Description
B9H1N81e-120B9H1N8_POPTR Lysine/histidine transporter (Fragment) OS=Populus trichocarpa GN=PtrLHT9 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL13051(6 genes,4 taxa):Arabidopsis thalianaAT4G35180.1
ORTHOMCL13051(6 genes,4 taxa):Brassica oleraceaBol013722
ORTHOMCL13051(6 genes,4 taxa):Brassica oleraceaBol024266
ORTHOMCL13051(6 genes,4 taxa):Brassica rapaBra011590
ORTHOMCL13051(6 genes,4 taxa):Brassica rapaBra017702
ORTHOMCL13051(6 genes,4 taxa):Carica papayaevm.TU.supercontig_20.138
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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