Basic Information
Gene Model:Bol024228
Gene Family:Transcription Factor Families
Chromosome:Cun
Scaffold:Scaffold000093_P1
Sequence:
 | 
Gene Structure
Nucleotide Length:1325 bp
Transcript Length:990 bp
Protein Length:329 aa
Strand:+
Location:Scaffold000093_P1: 91087 : 92411
Gene CDSs(5): 1-364 | 438-542 | 643-810 | 898-992 | 1068-1325 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Gene3DG3DSA:2.40.330.10no description 1 80 1.2e-21Not foundNot found
HMMPfamPF02362B3 14 80 4.2e-17IPR003340Transcriptional factor B3
Segsegseg 176 191 NANot foundNot found
Segsegseg 155 169 NANot foundNot found
Segsegseg 126 147 NANot foundNot found
Segsegseg 88 113 NANot foundNot found
Coilcoilcoiled-coil 119 140 NANot foundNot found
ProfileScanPS50863B3 1 78 14.974IPR003340Transcriptional factor B3
Gene Ontology
GO TermGO TypeDescription
GO:0003677 Molecular Function DNA binding
GO:0006355 Biological Process regulation of transcription, DNA-dependent
Swiss-Prot
Best HitE_value Description
Q9SZ055e-78Y3440_ARATH B3 domain-containing protein At4g34400 OS=Arabidopsis thaliana GN=At4g34400 PE=2 SV=2
TrEMBL
Best HitE_value Description
B7FNG42e-10B7FNG4_MEDTR Putative uncharacterized protein OS=Medicago truncatula PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL25708(2 genes,2 taxa):Brassica oleraceaBol024228
ORTHOMCL25708(2 genes,2 taxa):Brassica rapaBra017651
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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