Basic Information
Gene Model:Bol024053
Gene Family:Transcription Factor Families
Chromosome:C06
Scaffold:Scaffold000096
Sequence:
 | 
Gene Structure
Nucleotide Length:2417 bp
Transcript Length:1782 bp
Protein Length:593 aa
Strand:-
Location:C06: 8504899 : 8507315
Gene CDSs(7): 1-737 | 879-971 | 1063-1261 | 1345-1421 | 1497-1898 | 1990-2133 | 2288-2417 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
superfamilySSF52172CheY-like 15 169 1.1e-08IPR011006CheY-like
superfamilySSF46689Homeodomain-like 198 261 1.8e-10IPR009057Homeodomain-like
HMMTigrTIGR01557myb_SHAQKYF: myb-lik 204 257 2.4e-07IPR006447Myb-like DNA-binding region, SHAQKYF class
ProfileScanPS50110RESPONSE_REGULATORY 19 131 14.006IPR001789Signal transduction response regulator, receiver region
Gene3DG3DSA:1.10.10.60no description 198 261 1e-10IPR012287Homeodomain-related
Segsegseg 304 314 NANot foundNot found
Segsegseg 370 381 NANot foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0000156 Molecular Function two-component response regulator activity
GO:0000160 Biological Process two-component signal transduction system (phosphorelay)
GO:0003677 Molecular Function DNA binding
GO:0006355 Biological Process regulation of transcription, DNA-dependent
GO:0045449 Biological Process regulation of transcription
Swiss-Prot
Best HitE_value Description
Q9C9F66e-66APRR6_ARATH Putative two-component response regulator-like APRR6 OS=Arabidopsis thaliana GN=APRR6 PE=3 SV=1
TrEMBL
Best HitE_value Description
Q5SML53e-13Q5SML5_ORYSJ Os06g0183100 protein OS=Oryza sativa subsp. japonica GN=OSJNBb0036B04.15 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT1G682101e-100K14491ARR-Btwo-component response regulator ARR-B family
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL17744(3 genes,3 taxa):Arabidopsis thalianaAT1G68210.1
ORTHOMCL17744(3 genes,3 taxa):Brassica oleraceaBol024053
ORTHOMCL17744(3 genes,3 taxa):Brassica rapaBra004289
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC06:8058795..8560679 (-)A.thalianaChr1:8845231..9038246 (+)11
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC06:8430786..9634181 (+)B.rapaA07:16888237..17496272 (-)69
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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