Basic Information
Gene Model:Bol023974
Gene Family:Transcription Factor Families
Chromosome:C06
Scaffold:Scaffold000096
Sequence:
 | 
Gene Structure
Nucleotide Length:1992 bp
Transcript Length:1440 bp
Protein Length:479 aa
Strand:-
Location:C06: 7802502 : 7804493
Gene CDSs(8): 1-41 | 126-219 | 289-456 | 538-609 | 698-766 | 852-917 | 988-1218 | 1294-1992 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Gene3DG3DSA:4.10.280.10no description 296 377 1.6e-07IPR011598Helix-loop-helix DNA-binding
HMMSmartSM00353no description 306 356 5.5e-10IPR001092Basic helix-loop-helix dimerisation region bHLH
ProfileScanPS50888HLH 294 351 11.765IPR001092Basic helix-loop-helix dimerisation region bHLH
HMMPfamPF00010HLH 301 351 7.9e-07IPR001092Basic helix-loop-helix dimerisation region bHLH
Segsegseg 392 405 NANot foundNot found
Segsegseg 68 87 NANot foundNot found
superfamilySSF47459HLH, helix-loop-heli 296 371 4.8e-16IPR011598Helix-loop-helix DNA-binding
HMMPantherPTHR12565STEROL REGULATORY EL 303 350 3.9e-06Not foundNot found
HMMPantherPTHR12565:SF7CENTROMERE-BINDING P 303 350 3.9e-06Not foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0005634 Cellular Component nucleus
GO:0030528 Molecular Function transcription regulator activity
GO:0045449 Biological Process regulation of transcription
Swiss-Prot
Best HitE_value Description
Q9CAA90.0BH049_ARATH Transcription factor bHLH49 OS=Arabidopsis thaliana GN=BHLH49 PE=2 SV=1
TrEMBL
Best HitE_value Description
C0Z2X30.0C0Z2X3_ARATH AT1G68920 protein OS=Arabidopsis thaliana GN=At1g68920 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL3627(12 genes,8 taxa):Arabidopsis thalianaAT1G68920.1
ORTHOMCL3627(12 genes,8 taxa):Brassica oleraceaBol023974
ORTHOMCL3627(12 genes,8 taxa):Brassica oleraceaBol028627
ORTHOMCL3627(12 genes,8 taxa):Brassica rapaBra004348
ORTHOMCL3627(12 genes,8 taxa):Brassica rapaBra038336
ORTHOMCL3627(12 genes,8 taxa):Vitis viniferaGSVIVT01010126001
ORTHOMCL3627(12 genes,8 taxa):Oryza sativaOs06t0275600-01
ORTHOMCL3627(12 genes,8 taxa):Oryza sativaOs09t0474100-01
ORTHOMCL3627(12 genes,8 taxa):Populus trichocarpaPOPTR_0008s11240.1
ORTHOMCL3627(12 genes,8 taxa):Populus trichocarpaPOPTR_0010s14600.1
ORTHOMCL3627(12 genes,8 taxa):Sorghum bicolorSb02g027430.1
ORTHOMCL3627(12 genes,8 taxa):Carica papayaevm.TU.supercontig_1.173
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC06:7048411..8644772 (-)A.thalianaChr1:25473544..26300472 (+)123
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC06:7194910..8644772 (+)B.rapaA07:17832928..18615072 (-)119
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
EAT1G689202591501225917877Chr1Subgenome_III(LF)159
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


logo