Basic Information
Gene Model:Bol023857
Gene Family:Transcription Factor Families
Chromosome:C06
Scaffold:Scaffold000097
Sequence:
 | 
Gene Structure
Nucleotide Length:3465 bp
Transcript Length:2556 bp
Protein Length:851 aa
Strand:+
Location:C06: 28099515 : 28102979
Gene CDSs(3): 1-855 | 1596-2547 | 2717-3465 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Segsegseg 723 734 NANot foundNot found
Segsegseg 691 700 NANot foundNot found
Segsegseg 2 23 NANot foundNot found
HMMPfamPF00564PB1 753 836 4.1e-25IPR000270Octicosapeptide/Phox/Bem1p
HMMPfamPF02042RWP-RK 577 628 1.1e-26IPR003035Plant regulator RWP-RK
superfamilySSF54277CAD & PB1 domains 748 836 1.3e-26Not foundNot found
HMMSmartSM00666no description 753 836 9.9e-28IPR000270Octicosapeptide/Phox/Bem1p
Gene3DG3DSA:3.10.20.240no description 748 836 1.4e-05Not foundNot found
Gene Ontology
GO TermGO TypeDescription

Note: this gene was not detected its best hit in Swiss-Prot database.

Swiss-Prot
Best HitE_value Description

Note: best hit of this gene was not detected in Swiss-Prot database.

TrEMBL
Best HitE_value Description
Q8H1110.0Q8H111_ARATH Putative uncharacterized protein At2g17150 OS=Arabidopsis thaliana GN=At2g17150 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL375(31 genes,8 taxa):Arabidopsis thalianaAT1G20640.1
ORTHOMCL375(31 genes,8 taxa):Arabidopsis thalianaAT1G76350.1
ORTHOMCL375(31 genes,8 taxa):Arabidopsis thalianaAT2G17150.1
ORTHOMCL375(31 genes,8 taxa):Arabidopsis thalianaAT4G35270.1
ORTHOMCL375(31 genes,8 taxa):Brassica oleraceaBol013731
ORTHOMCL375(31 genes,8 taxa):Brassica oleraceaBol023857
ORTHOMCL375(31 genes,8 taxa):Brassica oleraceaBol025455
ORTHOMCL375(31 genes,8 taxa):Brassica rapaBra002025
ORTHOMCL375(31 genes,8 taxa):Brassica rapaBra009659
ORTHOMCL375(31 genes,8 taxa):Brassica rapaBra011600
ORTHOMCL375(31 genes,8 taxa):Brassica rapaBra012241
ORTHOMCL375(31 genes,8 taxa):Brassica rapaBra015758
ORTHOMCL375(31 genes,8 taxa):Brassica rapaBra016458
ORTHOMCL375(31 genes,8 taxa):Brassica rapaBra017705
ORTHOMCL375(31 genes,8 taxa):Brassica rapaBra025834
ORTHOMCL375(31 genes,8 taxa):Vitis viniferaGSVIVT01013370001
ORTHOMCL375(31 genes,8 taxa):Vitis viniferaGSVIVT01023886001
ORTHOMCL375(31 genes,8 taxa):Oryza sativaOs03t0131100-01
ORTHOMCL375(31 genes,8 taxa):Oryza sativaOs09t0549450-00
ORTHOMCL375(31 genes,8 taxa):Populus trichocarpaPOPTR_0002s01060.1
ORTHOMCL375(31 genes,8 taxa):Populus trichocarpaPOPTR_0002s01060.2
ORTHOMCL375(31 genes,8 taxa):Populus trichocarpaPOPTR_0004s21550.1
ORTHOMCL375(31 genes,8 taxa):Populus trichocarpaPOPTR_0005s27310.1
ORTHOMCL375(31 genes,8 taxa):Populus trichocarpaPOPTR_0009s16790.1
ORTHOMCL375(31 genes,8 taxa):Populus trichocarpaPOPTR_0009s16820.1
ORTHOMCL375(31 genes,8 taxa):Populus trichocarpaPOPTR_0009s16830.1
ORTHOMCL375(31 genes,8 taxa):Populus trichocarpaPOPTR_0016s04220.1
ORTHOMCL375(31 genes,8 taxa):Sorghum bicolorSb01g048290.1
ORTHOMCL375(31 genes,8 taxa):Sorghum bicolorSb02g031970.1
ORTHOMCL375(31 genes,8 taxa):Carica papayaevm.TU.supercontig_20.207
ORTHOMCL375(31 genes,8 taxa):Carica papayaevm.TU.supercontig_26.187
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC06:27757182..28433277 (-)A.thalianaChr2:7353847..7577300 (+)20
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC06:27503919..28433277 (+)B.rapaA10:5359379..6126423 (-)17
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
HAT2G1715074668417471262Chr2Subgenome_I20
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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