Basic Information
Gene Model:Bol023778
Gene Family:Not classificated
Chromosome:C06
Scaffold:Scaffold000097
Sequence:
 | 
Gene Structure
Nucleotide Length:903 bp
Transcript Length:747 bp
Protein Length:248 aa
Strand:+
Location:C06: 27293360 : 27294262
Gene CDSs(3): 1-156 | 232-332 | 414-903 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPantherPTHR13903PIRIN-RELATED 31 248 1.8e-71IPR012093Pirin
HMMPfamPF05726Pirin_C 131 238 3.3e-42IPR008778Pirin, C-terminal
HMMPfamPF02678Pirin 1 78 9e-12IPR003829Pirin, N-terminal
superfamilySSF51182RmlC-like cupins 30 247 2.1e-53IPR011051Cupin, RmlC-type
HMMPIRPIRSF006232Pirin 1 241 4.5e-52IPR012093Pirin
Gene Ontology
GO TermGO TypeDescription

Note: this gene was not detected its best hit in Swiss-Prot database.

Swiss-Prot
Best HitE_value Description
Q9LX454e-96PIRL4_ARATH Putative pirin-like protein At3g59260 OS=Arabidopsis thaliana GN=At3g59260 PE=2 SV=1
TrEMBL
Best HitE_value Description
Q147N76e-85Q147N7_ARATH At3g59220 OS=Arabidopsis thaliana PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT2G431205e-83K06911K06911--
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List

Note: the orthologous genes of this gene was not detected by OrthoMCL software with default parameters.

Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC06:27170678..27957263 (+)A.thalianaChr3:21810260..22350371 (+)50
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC06:26903207..28134287 (+)B.rapaA09:13101380..13920789 (+)51
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
NAT3G592602190383921905188Chr3Subgenome_II89
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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