Basic Information
Gene Model:Bol023665
Gene Family:Transcription Factor Families
Chromosome:Cun
Scaffold:Scaffold000098
Sequence:
 | 
Gene Structure
Nucleotide Length:1116 bp
Transcript Length:1116 bp
Protein Length:371 aa
Strand:-
Location:Scaffold000098: 720444 : 721559
Gene CDSs(1): 1-1116 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Segsegseg 9 37 NANot foundNot found
Segsegseg 226 237 NANot foundNot found
Gene3DG3DSA:2.40.330.10no description 189 322 8.1e-37Not foundNot found
Gene3DG3DSA:3.30.730.10no description 68 127 6.9e-16IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
ProfileScanPS51032AP2_ERF 69 124 19.454IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
ProfileScanPS50863B3 196 310 13.704IPR003340Transcriptional factor B3
HMMPfamPF02362B3 195 312 1.8e-34IPR003340Transcriptional factor B3
HMMPfamPF00847AP2 68 117 8.1e-13IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
HMMSmartSM00380no description 69 130 2e-27IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
superfamilySSF54171DNA-binding domain 68 127 2.9e-18IPR016177DNA-binding, integrase-type
Gene Ontology
GO TermGO TypeDescription
GO:0003677 Molecular Function DNA binding
GO:0003700 Molecular Function sequence-specific DNA binding transcription factor activity
GO:0006355 Biological Process regulation of transcription, DNA-dependent
Swiss-Prot
Best HitE_value Description
Q9C6M51e-169RAVL1_ARATH AP2/ERF and B3 domain-containing transcription repressor TEM1 OS=Arabidopsis thaliana GN=TEM1 PE=1 SV=1
TrEMBL
Best HitE_value Description
B9HWL71e-124B9HWL7_POPTR AP2 domain-containing transcription factor OS=Populus trichocarpa GN=RAV1 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT1G255601e-168K09287RAVRAV-like factor
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL13783(5 genes,4 taxa):Arabidopsis thalianaAT1G25560.1
ORTHOMCL13783(5 genes,4 taxa):Brassica oleraceaBol023665
ORTHOMCL13783(5 genes,4 taxa):Brassica rapaBra024735
ORTHOMCL13783(5 genes,4 taxa):Populus trichocarpaPOPTR_0008s11600.1
ORTHOMCL13783(5 genes,4 taxa):Populus trichocarpaPOPTR_0010s13930.1
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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