Basic Information
Gene Model:Bol023637
Gene Family:Not classificated
Chromosome:Cun
Scaffold:Scaffold000098
Sequence:
 | 
Gene Structure
Nucleotide Length:2586 bp
Transcript Length:1035 bp
Protein Length:344 aa
Strand:+
Location:Scaffold000098: 362748 : 365333
Gene CDSs(7): 1-116 | 532-594 | 713-829 | 1307-1565 | 1905-2063 | 2162-2313 | 2418-2586 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF00892DUF6 176 305 5.5e-05IPR000620Protein of unknown function DUF6, transmembrane
HMMPfamPF00892DUF6 18 129 5.7e-10IPR000620Protein of unknown function DUF6, transmembrane
Segsegseg 114 126 NANot foundNot found
Segsegseg 72 86 NANot foundNot found
superfamilySSF103481Multidrug resistance 21 136 5.2e-07Not foundNot found
superfamilySSF103481Multidrug resistance 208 312 5.6e-08Not foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0016020 Cellular Component membrane
Swiss-Prot
Best HitE_value Description
Q6J1631e-305NG4_PINTA Auxin-induced protein 5NG4 OS=Pinus taeda PE=2 SV=1
TrEMBL
Best HitE_value Description
Q4PT231e-157Q4PT23_ARATH Nodulin MtN21 family protein OS=Arabidopsis thaliana GN=At1g25270 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL1104(19 genes,8 taxa):Arabidopsis thalianaAT1G25270.1
ORTHOMCL1104(19 genes,8 taxa):Arabidopsis thalianaAT1G68170.1
ORTHOMCL1104(19 genes,8 taxa):Brassica oleraceaBol004563
ORTHOMCL1104(19 genes,8 taxa):Brassica oleraceaBol023637
ORTHOMCL1104(19 genes,8 taxa):Brassica rapaBra024767
ORTHOMCL1104(19 genes,8 taxa):Vitis viniferaGSVIVT01026595001
ORTHOMCL1104(19 genes,8 taxa):Vitis viniferaGSVIVT01026597001
ORTHOMCL1104(19 genes,8 taxa):Vitis viniferaGSVIVT01026601001
ORTHOMCL1104(19 genes,8 taxa):Vitis viniferaGSVIVT01026602001
ORTHOMCL1104(19 genes,8 taxa):Vitis viniferaGSVIVT01026605001
ORTHOMCL1104(19 genes,8 taxa):Vitis viniferaGSVIVT01026606001
ORTHOMCL1104(19 genes,8 taxa):Vitis viniferaGSVIVT01026607001
ORTHOMCL1104(19 genes,8 taxa):Vitis viniferaGSVIVT01026608001
ORTHOMCL1104(19 genes,8 taxa):Oryza sativaOs04t0687800-01
ORTHOMCL1104(19 genes,8 taxa):Populus trichocarpaPOPTR_0001s31530.1
ORTHOMCL1104(19 genes,8 taxa):Sorghum bicolorSb06g033770.1
ORTHOMCL1104(19 genes,8 taxa):Sorghum bicolorSb06g033810.1
ORTHOMCL1104(19 genes,8 taxa):Carica papayaevm.TU.supercontig_2.35
ORTHOMCL1104(19 genes,8 taxa):Carica papayaevm.TU.supercontig_2.38
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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