Basic Information
Gene Model:Bol023586
Gene Family:Transcription Factor Families
Chromosome:C08
Scaffold:Scaffold000099_P2
Sequence:
 | 
Gene Structure
Nucleotide Length:3429 bp
Transcript Length:2418 bp
Protein Length:805 aa
Strand:-
Location:C08: 22166617 : 22170045
Gene CDSs(12): 1-127 | 216-331 | 411-509 | 593-649 | 720-875 | 946-1030 | 1242-1368 | 1440-1562 | 1647-1858 | 1944-2944 | 3031-3221 | 3306-3429 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF02309AUX_IAA 619 789 0.001IPR003311AUX/IAA protein
HMMPfamPF06507Auxin_resp 239 322 1.7e-56IPR010525Auxin response factor
HMMPfamPF02362B3 155 216 2.7e-16IPR003340Transcriptional factor B3
Gene3DG3DSA:2.40.330.10no description 143 221 5.8e-19Not foundNot found
Segsegseg 661 670 NANot foundNot found
Segsegseg 432 451 NANot foundNot found
Segsegseg 237 244 NANot foundNot found
Segsegseg 21 30 NANot foundNot found
ProfileScanPS50962IAA_ARF 698 780 25.844IPR011525Aux/IAA-ARF-dimerisation
Gene Ontology
GO TermGO TypeDescription
GO:0003677 Molecular Function DNA binding
GO:0005634 Cellular Component nucleus
GO:0006355 Biological Process regulation of transcription, DNA-dependent
GO:0009725 Biological Process response to hormone stimulus
GO:0045449 Biological Process regulation of transcription
GO:0046983 Molecular Function protein dimerization activity
Swiss-Prot
Best HitE_value Description
P930240.0ARFE_ARATH Auxin response factor 5 OS=Arabidopsis thaliana GN=ARF5 PE=1 SV=3
TrEMBL
Best HitE_value Description
B9R8650.0B9R865_RICCO Auxin response factor, putative OS=Ricinus communis GN=RCOM_1597120 PE=3 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT1G198500.0K14486K14486, ARFauxin response factor
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL2826(13 genes,7 taxa):Arabidopsis thalianaAT1G19850.1
ORTHOMCL2826(13 genes,7 taxa):Brassica oleraceaBol002918
ORTHOMCL2826(13 genes,7 taxa):Brassica oleraceaBol023586
ORTHOMCL2826(13 genes,7 taxa):Brassica oleraceaBol026901
ORTHOMCL2826(13 genes,7 taxa):Brassica rapaBra012190
ORTHOMCL2826(13 genes,7 taxa):Brassica rapaBra016492
ORTHOMCL2826(13 genes,7 taxa):Brassica rapaBra025775
ORTHOMCL2826(13 genes,7 taxa):Oryza sativaOs04t0664400-01
ORTHOMCL2826(13 genes,7 taxa):Oryza sativaOs04t0664400-02
ORTHOMCL2826(13 genes,7 taxa):Populus trichocarpaPOPTR_0002s02630.1
ORTHOMCL2826(13 genes,7 taxa):Populus trichocarpaPOPTR_0005s25800.1
ORTHOMCL2826(13 genes,7 taxa):Sorghum bicolorSb06g031900.1
ORTHOMCL2826(13 genes,7 taxa):Carica papayaevm.TU.supercontig_26.24
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC08:22001395..22250789 (-)A.thalianaChr1:28299792..28554768 (+)13
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC08:21790494..22274767 (+)B.rapaA08:2199566..2475933 (+)30
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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