Basic Information
Gene Model:Bol023511
Gene Family:U-box Gene Family
Chromosome:Cun
Scaffold:Scaffold000099_P1
Sequence:
 | 
Gene Structure
Nucleotide Length:2167 bp
Transcript Length:1827 bp
Protein Length:608 aa
Strand:-
Location:Scaffold000099_P1: 524243 : 526409
Gene CDSs(4): 1-1047 | 1121-1501 | 1601-1717 | 1886-2167 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
ProfileScanPS50176ARM_REPEAT 451 493 8.627IPR000225Armadillo
ProfileScanPS50176ARM_REPEAT 492 535 10.097IPR000225Armadillo
ProfileScanPS50176ARM_REPEAT 369 411 11.882IPR000225Armadillo
HMMPantherPTHR23315BETA CATENIN-RELATED 337 544 8.4e-18Not foundNot found
HMMPantherPTHR23315:SF8VACUOLAR PROTEIN 8-R 337 544 8.4e-18Not foundNot found
HMMSmartSM00185no description 523 563 42IPR000225Armadillo
HMMSmartSM00185no description 440 480 0.00014IPR000225Armadillo
HMMSmartSM00185no description 481 522 0.021IPR000225Armadillo
HMMSmartSM00185no description 399 439 94IPR000225Armadillo
HMMSmartSM00504no description 240 303 2.2e-30IPR003613U box domain
HMMSmartSM00185no description 358 398 4.9e-05IPR000225Armadillo
HMMPfamPF00514Arm 523 563 0.0083IPR000225Armadillo
HMMPfamPF00514Arm 481 522 0.00085IPR000225Armadillo
HMMPfamPF00514Arm 440 480 7.5e-09IPR000225Armadillo
HMMPfamPF04564U-box 236 310 1.3e-23IPR003613U box domain
HMMPfamPF00514Arm 358 398 1.5e-10IPR000225Armadillo
superfamilySSF57850RING/U-box 220 304 4.9e-10Not foundNot found
superfamilySSF48371ARM repeat 277 605 1e-67IPR016024Armadillo-type fold
Segsegseg 9 21 NANot foundNot found
Gene3DG3DSA:1.25.10.10no description 325 603 1.1e-55IPR011989Armadillo-like helical
Gene3DG3DSA:3.30.40.10no description 233 310 1.2e-27Not foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0000151 Cellular Component ubiquitin ligase complex
GO:0004842 Molecular Function ubiquitin-protein ligase activity
GO:0005488 Molecular Function binding
GO:0016567 Biological Process protein ubiquitination
Swiss-Prot
Best HitE_value Description
Q8GUG90.0PUB11_ARATH U-box domain-containing protein 11 OS=Arabidopsis thaliana GN=PUB11 PE=2 SV=2
TrEMBL
Best HitE_value Description
B9SJ370.0B9SJ37_RICCO E3 ubiquitin ligase PUB14, putative OS=Ricinus communis GN=RCOM_0842310 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
yli:YALI0E13992g7e-20K08332VAC8vacuolar protein 8
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL2330(14 genes,8 taxa):Arabidopsis thalianaAT1G23030.1
ORTHOMCL2330(14 genes,8 taxa):Arabidopsis thalianaAT1G71020.1
ORTHOMCL2330(14 genes,8 taxa):Brassica oleraceaBol012315
ORTHOMCL2330(14 genes,8 taxa):Brassica oleraceaBol016165
ORTHOMCL2330(14 genes,8 taxa):Brassica oleraceaBol023511
ORTHOMCL2330(14 genes,8 taxa):Brassica rapaBra012355
ORTHOMCL2330(14 genes,8 taxa):Brassica rapaBra016165
ORTHOMCL2330(14 genes,8 taxa):Brassica rapaBra024559
ORTHOMCL2330(14 genes,8 taxa):Vitis viniferaGSVIVT01011767001
ORTHOMCL2330(14 genes,8 taxa):Oryza sativaOs02t0732200-01
ORTHOMCL2330(14 genes,8 taxa):Populus trichocarpaPOPTR_0008s12760.1
ORTHOMCL2330(14 genes,8 taxa):Populus trichocarpaPOPTR_0010s12410.1
ORTHOMCL2330(14 genes,8 taxa):Sorghum bicolorSb04g028890.1
ORTHOMCL2330(14 genes,8 taxa):Carica papayaevm.TU.supercontig_65.122
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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