Basic Information
Gene Model:Bol023451
Gene Family:U-box Gene Family
Gene Structure
Nucleotide Length:1272 bp
Transcript Length:1272 bp
Protein Length:423 aa
Location:C08: 927641 : 928912
Gene CDSs(1): 1-1272 |
Protein Sequence Features
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Gene3DG3DSA: description 124 383 3.1e-09IPR011989Armadillo-like helical
Gene3DG3DSA: description 10 87 1.4e-26Not foundNot found
HMMPantherPTHR22849WDSAM1 PROTEIN 14 95 7.5e-12Not foundNot found
HMMSmartSM00504no description 17 80 3.1e-34IPR003613U box domain
superfamilySSF57850RING/U-box 13 70 1.2e-07Not foundNot found
superfamilySSF48371ARM repeat 54 402 1e-29IPR016024Armadillo-type fold
HMMPfamPF04564U-box 13 87 3.2e-30IPR003613U box domain
Segsegseg 360 371 NANot foundNot found
Segsegseg 164 182 NANot foundNot found
Segsegseg 252 263 NANot foundNot found
Segsegseg 122 136 NANot foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0000151 Cellular Component ubiquitin ligase complex
GO:0004842 Molecular Function ubiquitin-protein ligase activity
GO:0005488 Molecular Function binding
GO:0016567 Biological Process protein ubiquitination
Best HitE_value Description
Q9FXA40.0PUB26_ARATH U-box domain-containing protein 26 OS=Arabidopsis thaliana GN=PUB26 PE=2 SV=1
Best HitE_value Description
A8IXJ00.0A8IXJ0_BRACM U-box domain-containing protein OS=Brassica campestris PE=2 SV=1
Best HitE_valueKOEC or Symbol Description
vcn:VOLCADRAFT_678403e-08K09561STUB1, CHIPSTIP1 homology and U-box containing protein 1
Gene Cluster
OrthoMCL GroupSpeciesGene List
ORTHOMCL1980(15 genes,8 taxa):Arabidopsis thalianaAT1G49780.1
ORTHOMCL1980(15 genes,8 taxa):Arabidopsis thalianaAT3G19380.1
ORTHOMCL1980(15 genes,8 taxa):Brassica oleraceaBol018091
ORTHOMCL1980(15 genes,8 taxa):Brassica oleraceaBol023451
ORTHOMCL1980(15 genes,8 taxa):Brassica oleraceaBol031005
ORTHOMCL1980(15 genes,8 taxa):Brassica rapaBra014206
ORTHOMCL1980(15 genes,8 taxa):Brassica rapaBra022415
ORTHOMCL1980(15 genes,8 taxa):Brassica rapaBra022417
ORTHOMCL1980(15 genes,8 taxa):Brassica rapaBra038205
ORTHOMCL1980(15 genes,8 taxa):Vitis viniferaGSVIVT01031720001
ORTHOMCL1980(15 genes,8 taxa):Oryza sativaOs02t0548700-00
ORTHOMCL1980(15 genes,8 taxa):Populus trichocarpaPOPTR_0004s14720.1
ORTHOMCL1980(15 genes,8 taxa):Populus trichocarpaPOPTR_0009s10310.1
ORTHOMCL1980(15 genes,8 taxa):Sorghum bicolorSb04g022280.1
ORTHOMCL1980(15 genes,8 taxa):Carica papayaevm.TU.supercontig_1383.1
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC08:150163..1086135 (+)A.thalianaChr1:18166147..18463785 (+)22
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC08:874736..3042680 (+)B.rapaA08:194760..1053784 (-)161
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.