Basic Information
Gene Model:Bol023399
Gene Family:Not classificated
Chromosome:C08
Scaffold:Scaffold000100
Sequence:
 | 
Gene Structure
Nucleotide Length:2042 bp
Transcript Length:1758 bp
Protein Length:585 aa
Strand:-
Location:C08: 1435679 : 1437720
Gene CDSs(4): 1-1263 | 1360-1473 | 1566-1830 | 1927-2042 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPantherPTHR13832PROTEIN PHOSPHATASE 211 580 1.4e-149IPR015655Protein phosphatase 2C
HMMPantherPTHR13832:SF97PROTEIN PHOSPHATASE- 211 580 1.4e-149Not foundNot found
Coilcoilcoiled-coil 320 341 NANot foundNot found
HMMSmartSM00332no description 214 574 1.6e-66IPR001932Protein phosphatase 2C-related
Segsegseg 418 429 NANot foundNot found
Segsegseg 135 154 NANot foundNot found
superfamilySSF81606Protein serine/threo 194 578 2.3e-50IPR001932Protein phosphatase 2C-related
HMMPfamPF00481PP2C 330 517 9.6e-23IPR014045Protein phosphatase 2C, N-terminal
Gene3DG3DSA:3.60.40.10no description 230 580 4.9e-45IPR001932Protein phosphatase 2C-related
Gene Ontology
GO TermGO TypeDescription
GO:0003824 Molecular Function catalytic activity
Swiss-Prot
Best HitE_value Description
Q9LQN60.0P2C04_ARATH Probable protein phosphatase 2C 4 OS=Arabidopsis thaliana GN=PLL5 PE=1 SV=1
TrEMBL
Best HitE_value Description
B9GJN90.0B9GJN9_POPTR Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_797687 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
spu:5840183e-20K01102E3.1.3.43, PDPpyruvate dehydrogenase phosphatase
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL626(24 genes,8 taxa):Arabidopsis thalianaAT1G07630.1
ORTHOMCL626(24 genes,8 taxa):Arabidopsis thalianaAT2G28890.1
ORTHOMCL626(24 genes,8 taxa):Arabidopsis thalianaAT3G09400.1
ORTHOMCL626(24 genes,8 taxa):Arabidopsis thalianaAT5G02400.1
ORTHOMCL626(24 genes,8 taxa):Brassica oleraceaBol000589
ORTHOMCL626(24 genes,8 taxa):Brassica oleraceaBol008347
ORTHOMCL626(24 genes,8 taxa):Brassica oleraceaBol011309
ORTHOMCL626(24 genes,8 taxa):Brassica oleraceaBol023399
ORTHOMCL626(24 genes,8 taxa):Brassica oleraceaBol033926
ORTHOMCL626(24 genes,8 taxa):Brassica oleraceaBol041143
ORTHOMCL626(24 genes,8 taxa):Brassica rapaBra001308
ORTHOMCL626(24 genes,8 taxa):Brassica rapaBra009593
ORTHOMCL626(24 genes,8 taxa):Brassica rapaBra029766
ORTHOMCL626(24 genes,8 taxa):Brassica rapaBra030695
ORTHOMCL626(24 genes,8 taxa):Brassica rapaBra041012
ORTHOMCL626(24 genes,8 taxa):Vitis viniferaGSVIVT01024976001
ORTHOMCL626(24 genes,8 taxa):Vitis viniferaGSVIVT01034176001
ORTHOMCL626(24 genes,8 taxa):Oryza sativaOs03t0821300-01
ORTHOMCL626(24 genes,8 taxa):Populus trichocarpaPOPTR_0001s24620.1
ORTHOMCL626(24 genes,8 taxa):Populus trichocarpaPOPTR_0001s24620.2
ORTHOMCL626(24 genes,8 taxa):Populus trichocarpaPOPTR_0006s08520.1
ORTHOMCL626(24 genes,8 taxa):Populus trichocarpaPOPTR_0009s03590.1
ORTHOMCL626(24 genes,8 taxa):Sorghum bicolorSb01g003190.1
ORTHOMCL626(24 genes,8 taxa):Carica papayaevm.TU.supercontig_81.160
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC08:1356352..2320189 (-)A.thalianaChr1:1607357..2374545 (+)77
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC08:1428736..2959055 (+)B.rapaA10:15715817..17879701 (-)96
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
AAT1G0763023490972351692Chr1Subgenome_II155
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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