Basic Information
Gene Model:Bol023324
Gene Family:ARIADNE Gene Families
Chromosome:C08
Scaffold:Scaffold000100
Sequence:
 | 
Gene Structure
Nucleotide Length:3689 bp
Transcript Length:1680 bp
Protein Length:559 aa
Strand:-
Location:C08: 2071002 : 2074690
Gene CDSs(15): 1-177 | 543-667 | 810-918 | 1014-1104 | 1274-1446 | 1528-1632 | 1720-1808 | 1892-1999 | 2095-2185 | 2283-2372 | 2710-2757 | 2945-3016 | 3114-3207 | 3304-3430 | 3509-3689 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF01485IBR 209 271 7.4e-25IPR002867Zinc finger, C6HC-type
HMMPfamPF00097zf-C3HC4 140 180 3.2e-06IPR018957Zinc finger, C3HC4 RING-type
HMMSmartSM00647no description 275 345 0.083IPR002867Zinc finger, C6HC-type
HMMSmartSM00647no description 209 271 2.5e-24IPR002867Zinc finger, C6HC-type
superfamilySSF57850RING/U-box 117 230 1.1e-12Not foundNot found
superfamilySSF57850RING/U-box 290 348 1.1e-16Not foundNot found
HMMPantherPTHR11685ARIADNE RING ZINC FI 99 543 0Not foundNot found
HMMPantherPTHR11685:SF10ARI-LIKE RING ZINC F 99 543 0Not foundNot found
ProfileScanPS50089ZF_RING_2 140 186 9.406IPR001841Zinc finger, RING-type
Segsegseg 526 555 NANot foundNot found
Coilcoilcoiled-coil 350 378 NANot foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0005515 Molecular Function protein binding
GO:0008270 Molecular Function zinc ion binding
Swiss-Prot
Best HitE_value Description
Q84RR00.0ARI7_ARATH Probable E3 ubiquitin-protein ligase ARI7 OS=Arabidopsis thaliana GN=ARI7 PE=2 SV=1
TrEMBL
Best HitE_value Description
B9HYH60.0B9HYH6_POPTR Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_822354 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
pop:POPTR_8322090.0K11968ARIH1ariadne-1
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL241(38 genes,8 taxa):Arabidopsis thalianaAT1G05890.1
ORTHOMCL241(38 genes,8 taxa):Arabidopsis thalianaAT2G31510.1
ORTHOMCL241(38 genes,8 taxa):Arabidopsis thalianaAT2G31760.1
ORTHOMCL241(38 genes,8 taxa):Arabidopsis thalianaAT2G31770.1
ORTHOMCL241(38 genes,8 taxa):Arabidopsis thalianaAT2G31780.1
ORTHOMCL241(38 genes,8 taxa):Brassica oleraceaBol004534
ORTHOMCL241(38 genes,8 taxa):Brassica oleraceaBol004656
ORTHOMCL241(38 genes,8 taxa):Brassica oleraceaBol006452
ORTHOMCL241(38 genes,8 taxa):Brassica oleraceaBol006453
ORTHOMCL241(38 genes,8 taxa):Brassica oleraceaBol008223
ORTHOMCL241(38 genes,8 taxa):Brassica oleraceaBol009030
ORTHOMCL241(38 genes,8 taxa):Brassica oleraceaBol014128
ORTHOMCL241(38 genes,8 taxa):Brassica oleraceaBol023324
ORTHOMCL241(38 genes,8 taxa):Brassica oleraceaBol024724
ORTHOMCL241(38 genes,8 taxa):Brassica oleraceaBol041028
ORTHOMCL241(38 genes,8 taxa):Brassica oleraceaBol045042
ORTHOMCL241(38 genes,8 taxa):Brassica rapaBra005642
ORTHOMCL241(38 genes,8 taxa):Brassica rapaBra006112
ORTHOMCL241(38 genes,8 taxa):Brassica rapaBra015463
ORTHOMCL241(38 genes,8 taxa):Brassica rapaBra021726
ORTHOMCL241(38 genes,8 taxa):Brassica rapaBra021742
ORTHOMCL241(38 genes,8 taxa):Brassica rapaBra022479
ORTHOMCL241(38 genes,8 taxa):Brassica rapaBra022845
ORTHOMCL241(38 genes,8 taxa):Brassica rapaBra022865
ORTHOMCL241(38 genes,8 taxa):Brassica rapaBra023338
ORTHOMCL241(38 genes,8 taxa):Vitis viniferaGSVIVT01003757001
ORTHOMCL241(38 genes,8 taxa):Vitis viniferaGSVIVT01010742001
ORTHOMCL241(38 genes,8 taxa):Oryza sativaOs04t0492100-01
ORTHOMCL241(38 genes,8 taxa):Oryza sativaOs08t0540300-01
ORTHOMCL241(38 genes,8 taxa):Oryza sativaOs09t0513800-01
ORTHOMCL241(38 genes,8 taxa):Populus trichocarpaPOPTR_0007s02130.1
ORTHOMCL241(38 genes,8 taxa):Populus trichocarpaPOPTR_0008s07680.1
ORTHOMCL241(38 genes,8 taxa):Populus trichocarpaPOPTR_0010s18800.1
ORTHOMCL241(38 genes,8 taxa):Populus trichocarpaPOPTR_0017s06050.1
ORTHOMCL241(38 genes,8 taxa):Sorghum bicolorSb06g021080.1
ORTHOMCL241(38 genes,8 taxa):Sorghum bicolorSb07g025570.1
ORTHOMCL241(38 genes,8 taxa):Carica papayaevm.TU.supercontig_71.10
ORTHOMCL241(38 genes,8 taxa):Carica papayaevm.TU.supercontig_99.46
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC08:1356352..2320189 (-)A.thalianaChr1:1607357..2374545 (+)77
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC08:1428736..2959055 (+)B.rapaA10:15715817..17879701 (-)96
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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