Basic Information
Gene Model:Bol023196
Gene Family:Not classificated
Chromosome:C01
Scaffold:Scaffold000102
Sequence:
 | 
Gene Structure
Nucleotide Length:1281 bp
Transcript Length:1176 bp
Protein Length:391 aa
Strand:+
Location:C01: 36616215 : 36617495
Gene CDSs(2): 1-417 | 523-1281 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMSmartSM00331no description 115 385 0.0083IPR001932Protein phosphatase 2C-related
HMMSmartSM00332no description 91 383 1.8e-98IPR001932Protein phosphatase 2C-related
superfamilySSF81606Protein serine/threo 82 390 9e-76IPR001932Protein phosphatase 2C-related
Gene3DG3DSA:3.60.40.10no description 81 389 5.6e-74IPR001932Protein phosphatase 2C-related
Segsegseg 361 371 NANot foundNot found
Segsegseg 374 384 NANot foundNot found
Segsegseg 212 223 NANot foundNot found
PatternScanPS01032PP2C 136 144 NAIPR000222Protein phosphatase 2C, manganese/magnesium aspartate binding site
HMMPfamPF00481PP2C 102 378 2.9e-73IPR014045Protein phosphatase 2C, N-terminal
HMMPantherPTHR13832PROTEIN PHOSPHATASE 79 390 1.2e-122IPR015655Protein phosphatase 2C
HMMPantherPTHR13832:SF87PROTEIN PHOSPHATASE 79 390 1.2e-122Not foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0003824 Molecular Function catalytic activity
GO:0004722 Molecular Function protein serine/threonine phosphatase activity
GO:0006470 Biological Process protein dephosphorylation
GO:0008287 Cellular Component protein serine/threonine phosphatase complex
Swiss-Prot
Best HitE_value Description
P495981e-169P2C37_ARATH Protein phosphatase 2C 37 OS=Arabidopsis thaliana GN=PP2CA PE=1 SV=1
TrEMBL
Best HitE_value Description
Q9M3V11e-128Q9M3V1_FAGSY Protein phpsphatase 2C (PP2C) OS=Fagus sylvatica GN=pp2C1 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT3G114101e-168K14497PP2Cprotein phosphatase 2C
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL25590(2 genes,2 taxa):Brassica oleraceaBol023196
ORTHOMCL25590(2 genes,2 taxa):Brassica rapaBra002038
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC01:36102369..36625865 (-)A.thalianaChr5:1808150..2154553 (+)21
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC01:36102369..36903356 (+)B.rapaA10:2478744..2985115 (-)23
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
FAT3G1141035838833585790Chr3Subgenome_I279
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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